Evidence map›Paper›PMID 38521067›Full record

ArticleMolecular cell2024

Mitotic chromosomes are self-entangled and disentangle through a topoisomerase-II-dependent two-stage exit from mitosis.

Erica M Hildebrand, Kirill Polovnikov, Bastiaan Dekker, Yu Liu, Denis L Lafontaine, A Nicole Fox, Ying Li, Sergey V Venev, Leonid A Mirny, Job Dekker

Abstract read
In one paragraph

Article in Molecular cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
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  5. Article
  6. Article
  7. Article
  8. Article
  9. A universal polymer signature in Hi-C resolves cohesin loop density and supports monomeric extrusion.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. The Roles of Topoisomerases in Transcriptional Regulation.International journal of molecular sciences · 2026
    Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Erica M HildebrandDepartment of Systems Biology, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA.
Kirill PolovnikovIndependent Researcher, Moscow, Russia.
Bastiaan DekkerDepartment of Systems Biology, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA.
Yu LiuDepartment of Systems Biology, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA; Nuclear Dynamics and Cancer Program, Cancer Epigenetics Institute, Fox Chase Cancer Center, Temple Health, Philadelphia, PA 19111, USA.
Denis L LafontaineDepartment of Systems Biology, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA.
A Nicole FoxDepartment of Systems Biology, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA.
Ying LiDepartment of Systems Biology, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA.
Sergey V VenevDepartment of Systems Biology, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA.
Leonid A MirnyInstitute for Medical Engineering and Science and Department of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. Electronic address: leonid@mit.edu.
Job DekkerDepartment of Systems Biology, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address: job.dekker@umassmed.edu.

Funding

Structural Annotation of the Human GenomeR01HG003143 · NHGRI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Job Dekker · 2003 to 2026
$15.4M
Center for 3D Structure and Physics of the GenomeU54DK107980 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI DEKKER, JOB · 2015 to 2019
$14.9M
Center for 3D Structure and Physics of the GenomeUM1HG011536 · NHGRI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI DEKKER, JOB, MIRNY, LEONID A · 2020 to 2024
$11.8M
Polymer models of mitotic and interphase chromosomesR01GM114190 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI MIRNY, LEONID A · 2015 to 2023
$2.8M
Characterization of topological machines that control chromosome conformationF32CA224689 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI HILDEBRAND, ERICA MARIE · 2018 to 2021
$202k
NCI NIH HHS F32 CA224689NHGRI NIH HHS R01 HG003143NHGRI NIH HHS UM1 HG011536NIDDK NIH HHS U54 DK107980NIGMS NIH HHS R01 GM114190NSF NSF 2210558
6 · The paper itself

Abstract

The topological state of chromosomes determines their mechanical properties, dynamics, and function. Recent work indicated that interphase chromosomes are largely free of entanglements. Here, we use Hi-C, polymer simulations, and multi-contact 3C and find that, by contrast, mitotic chromosomes are self-entangled. We explore how a mitotic self-entangled state is converted into an unentangled interphase state during mitotic exit. Most mitotic entanglements are removed during anaphase/telophase, with remaining ones removed during early G1, in a topoisomerase-II-dependent process. Polymer models suggest a two-stage disentanglement pathway: first, decondensation of mitotic chromosomes with remaining condensin loops produces entropic forces that bias topoisomerase II activity toward decatenation. At the second stage, the loops are released, and the formation of new entanglements is prevented by lower topoisomerase II activity, allowing the establishment of unentangled and territorial G1 chromosomes. When mitotic entanglements are not removed in experiments and models, a normal interphase state cannot be acquired.

Indexed as

ChromosomesDNA Topoisomerases, Type IIInterphaseMitosisPolymersDNA Topoisomerases, Type IIPolymerschromosome entanglementchromosome foldingcohesinfractal globuleG1genome architecturegenome topologymitosisself-catenationtopoisomerase II

Identifiers

PMID38521067
PMCPMC11756355

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.