Evidence map›Paper›PMID 38520167›Full record

ArticleFEMS microbiology ecology2024

Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere.

Fede Berckx, Daniel Wibberg, Andreas Brachmann, Ciara Morrison, Nadia B Obaid, Jochen Blom, Jörn Kalinowski, Luis G Wall, Katharina Pawlowski

Abstract read
In one paragraph

Article in FEMS microbiology ecology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Fede BerckxDepartment of Ecology, Environment and Plant Science, Stockholm University, 106 91 Stockholm, Sweden.ORCID 0000-0003-2587-6140
Daniel WibbergCeBiTec, Bielefeld University, 33615 Bielefeld, Germany.ORCID 0000-0002-1331-4311
Andreas BrachmannLMU München, Faculty of Biology, Genetics, 82152 Planegg-Martinsried, Germany.ORCID 0000-0001-7980-8173
Ciara MorrisonDepartment of Ecology, Environment and Plant Science, Stockholm University, 106 91 Stockholm, Sweden.
Nadia B ObaidDepartment of Ecology, Environment and Plant Science, Stockholm University, 106 91 Stockholm, Sweden.
Jochen BlomBioinformatics and Systems Biology, Justus-Liebig University Giessen, 35392 Giessen, Germany.ORCID 0000-0001-6455-3622
Jörn KalinowskiCeBiTec, Bielefeld University, 33615 Bielefeld, Germany.ORCID 0000-0002-9052-1998
Luis G WallCONICET, National Council for Scientific and Technical Research, Argentina.ORCID 0000-0003-0880-8023
Katharina PawlowskiDepartment of Ecology, Environment and Plant Science, Stockholm University, 106 91 Stockholm, Sweden.ORCID 0000-0003-2693-885X

Funding

BMBF 031A533DFG SFB 992/1 2012Federal Ministry of Education and Research 031 A538A/A538CLars Hiertas Minne Foundation FO2019-0515Swedish Research Council 2012-03061
6 · The paper itself

Abstract

Coriariaceae are a small plant family of 14-17 species and subspecies that currently have a global but disjunct distribution. All species can form root nodules in symbiosis with diazotrophic Frankia cluster-2 strains, which form the earliest divergent symbiotic clade within this bacterial genus. Studies on Frankia cluster-2 mostly have focused on strains occurring in the northern hemisphere. Except for one strain from Papua New Guinea, namely Candidatus Frankia meridionalis Cppng1, no complete genome of Frankia associated with Coriaria occurring in the southern hemisphere has been published thus far, yet the majority of the Coriariaceae species occur here. We present field sampling data of novel Frankia cluster-2 strains, representing two novel species, which are associated with Coriaria arborea and Coriaria sarmentosa in New Zealand, and with Coriaria ruscifolia in Patagonia (Argentina), in addition to identifying Ca. F. meridionalis present in New Zealand. The novel Frankia species were found to be closely related to both Ca. F. meridionalis, and a Frankia species occurring in the Philippines, Taiwan, and Japan. Our data suggest that the different Frankia cluster-2 species diverged early after becoming symbiotic circa 100 million years ago.

Indexed as

FrankiaPhylogenySymbiosisArgentinaDNA, BacterialGenome, BacterialNew ZealandPhylogeographyRoot Nodules, PlantSequence Analysis, DNADNA, Bacterialactinorhizal symbiosisCoriariaceaeFrankiamicrobiomeNew ZealandPapua New GuineaPatagonia

Identifiers

PMID38520167
PMCPMC11074711

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.