Evidence map›Paper›PMID 38519803›Full record

ArticleMolecular diversity2024

In silico identification of potential phytochemical inhibitors for mpox virus: molecular docking, MD simulation, and ADMET studies.

Sudeep D Ghate, Larina Pinto, Shivakiran Alva, Mahendra Gowdru Srinivasa, Rajani Kanth Vangala, Prashantha Naik, B C Revanasiddappa, R Shyama Prasad Rao

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Article in Molecular diversity, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Exploring the Dynamics ofCurrent medicinal chemistry · 2025
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Sudeep D GhateCenter for Bioinformatics, NITTE Deemed to be University, Mangaluru, 575018, India. sudeep1129@gmail.com.
Larina Pinto *Center for Bioinformatics, NITTE Deemed to be University, Mangaluru, 575018, India.
Shivakiran Alva *Center for Bioinformatics, NITTE Deemed to be University, Mangaluru, 575018, India.
Mahendra Gowdru SrinivasaDepartment of Pharmaceutical Chemistry, Nitte (Deemed to be University) NGSM Institute of Pharmaceutical Sciences (NGSMIPS), Mangaluru, 575018, India.
Rajani Kanth VangalaInstitute for Applied Research and Innovation, Neuome Technologies Pvt. Ltd., Bangalore Bioinnovation Centre, IBAB Campus, Electronic City Phase 1, Bangalore, 560100, India.
Prashantha NaikDepartment of Biosciences, Mangalore University, Mangaluru, 574199, India.
B C RevanasiddappaDepartment of Pharmaceutical Chemistry, Nitte (Deemed to be University) NGSM Institute of Pharmaceutical Sciences (NGSMIPS), Mangaluru, 575018, India.
R Shyama Prasad RaoCenter for Bioinformatics, NITTE Deemed to be University, Mangaluru, 575018, India. drrsprao@gmail.com.
Nitte University · INMangalore University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mpox virus (MPXV), a member of the Poxviridae family, which recently appeared outside of the African continent has emerged as a global threat to public health. Given the scarcity of antiviral treatments for mpox disease, there is a pressing need to identify and develop new therapeutics. We investigated 5715 phytochemicals from 266 species available in IMMPAT database as potential inhibitors for six MPXV targets namely thymidylate kinase (A48R), DNA ligase (A50R), rifampicin resistance protein (D13L), palmytilated EEV membrane protein (F13L), viral core cysteine proteinase (I7L), and DNA polymerase (E9L) using molecular docking. The best-performing phytochemicals were also subjected to molecular dynamics (MD) simulations and in silico ADMET analysis. The top phytochemicals were forsythiaside for A48R, ruberythric acid for A50R, theasinensin F for D13L, theasinensin A for F13L, isocinchophyllamine for I7L, and terchebin for E9L. Interestingly, the binding energies of these potential phytochemical inhibitors were far lower than brincidofovir and tecovirimat, the standard drugs used against MPXV, hinting at better binding properties of the former. These findings may pave the way for developing new MPXV inhibitors based on natural product scaffolds. However, they must be further studied to establish their inhibitory efficacy and toxicity in in vitro and in vivo models.

Indexed as

Antiviral AgentsMolecular Docking SimulationMolecular Dynamics SimulationMonkeypox virusPhytochemicalsComputer SimulationAntiviral AgentsPhytochemicalsAntiviralsComputational drug discoveryMolecular dynamicsMpox virusPhytochemicals

Identifiers

PMID38519803
OpenAlexW4393097523

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.