Evidence map›Paper›PMID 38519651›Full record

ArticleCommunications biology2024

Transcriptomic investigation of the interaction between a biocontrol yeast, Papiliotrema terrestris strain PT22AV, and the postharvest fungal pathogen Penicillium expansum on apple.

Giuseppe Ianiri, Giuseppe Barone, Davide Palmieri, Michela Quiquero, Ilenia Gaeta, Filippo De Curtis, Raffaello Castoria

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
6.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Giuseppe IaniriDepartment of Agricultural, Environmental and Food Sciences, University of Molise, via F. De Sanctis snc, 86100, Campobasso, Italy. giuseppe.ianiri@unimol.it.ORCID 0000-0002-3278-8678
Giuseppe BaroneDepartment of Agricultural, Environmental and Food Sciences, University of Molise, via F. De Sanctis snc, 86100, Campobasso, Italy.
Davide PalmieriDepartment of Agricultural, Environmental and Food Sciences, University of Molise, via F. De Sanctis snc, 86100, Campobasso, Italy.
Michela QuiqueroDepartment of Agricultural, Environmental and Food Sciences, University of Molise, via F. De Sanctis snc, 86100, Campobasso, Italy.
Ilenia GaetaDepartment of Agricultural, Environmental and Food Sciences, University of Molise, via F. De Sanctis snc, 86100, Campobasso, Italy.
Filippo De CurtisDepartment of Agricultural, Environmental and Food Sciences, University of Molise, via F. De Sanctis snc, 86100, Campobasso, Italy.
Raffaello CastoriaDepartment of Agricultural, Environmental and Food Sciences, University of Molise, via F. De Sanctis snc, 86100, Campobasso, Italy. castoria@unimol.it.ORCID 0000-0003-0522-3660
University of Molise · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biocontrol strategies offer a promising alternative to control plant pathogens achieving food safety and security. In this study we apply a RNAseq analysis during interaction between the biocontrol agent (BCA) Papiliotrema terrestris, the pathogen Penicillium expansum, and the host Malus domestica. Analysis of the BCA finds overall 802 upregulated DEGs (differentially expressed genes) when grown in apple tissue, with the majority being involved in nutrients uptake and oxidative stress response. This suggests that these processes are crucial for the BCA to colonize the fruit wounds and outcompete the pathogen. As to P. expansum analysis, 1017 DEGs are upregulated when grown in apple tissue, with the most represented GO categories being transcription, oxidation reduction process, and transmembrane transport. Analysis of the host M. domestica finds a higher number of DEGs in response to the pathogen compared to the BCA, with overexpression of genes involved in host defense signaling pathways in the presence of both of them, and a prevalence of pattern-triggered immunity (PTI) and effector-triggered immunity (ETI) only during interaction with P. expansum. This analysis contributes to advance the knowledge on the molecular mechanisms that underlie biocontrol activity and the tritrophic interaction of the BCA with the pathogen and the host.

Indexed as

BasidiomycotaMalusPenicilliumGene Expression Profiling

Identifiers

PMID38519651
PMCPMC10960036
OpenAlexW4393079229

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.