Evidence map›Paper›PMID 38517960›Full record

ArticleScience advances2024

Childhood cancer mutagenesis caused by transposase-derived PGBD5.

Makiko Yamada, Ross R Keller, Rodrigo Lopez Gutierrez, Daniel Cameron, Hiromichi Suzuki, Reeti Sanghrajka, Jake Vaynshteyn, Jeffrey Gerwin, Francesco Maura, William Hooper and 15 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Toward a Unified Theory of Why Young People Develop Cancer.Cold Spring Harbor perspectives in medicine · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 10 institutions in 3 countries.

Makiko YamadaTow Center for Developmental Oncology, Department of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0002-7030-9682
Ross R KellerTow Center for Developmental Oncology, Department of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0002-3478-8348
Rodrigo Lopez GutierrezDepartment of Human Genetics, McGill University, Montreal, Quebec, Canada.ORCID 0009-0008-5413-3286
Daniel CameronTow Center for Developmental Oncology, Department of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Hiromichi SuzukiDivision of Brain Tumor Translational Research, National Cancer Center Research Institute, Tokyo, Japan.ORCID 0000-0002-8858-0294
Reeti SanghrajkaDevelopmental Biology Program, Sloan Kettering Institute, New York, NY, USA.
Jake VaynshteynDepartments of Neurology and Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0009-0005-5596-0871
Jeffrey GerwinDepartments of Neurology and Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Francesco MauraSylvester Comprehensive Cancer Center, University of Miami, Miami, FL, USA.
William HooperComputational Biology, New York Genome Center, New York, NY, USA.ORCID 0000-0002-0078-8921
Minita ShahComputational Biology, New York Genome Center, New York, NY, USA.
Nicolas RobineComputational Biology, New York Genome Center, New York, NY, USA.ORCID 0000-0001-5698-8183
Phillip DemarestTow Center for Developmental Oncology, Department of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0009-0005-0330-8785
N Sumru BayinDevelopmental Biology Program, Sloan Kettering Institute, New York, NY, USA.ORCID 0000-0003-4371-855X
Luz Jubierre ZapaterTow Center for Developmental Oncology, Department of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0001-9934-1590
Casie ReedTow Center for Developmental Oncology, Department of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Steven HébertLady Davis Institute for Medical Research, Jewish General Hospital, Montreal, Quebec, Canada.ORCID 0000-0001-6267-8595
Ignas MasilionisSingle-Cell Analytics Innovation Lab, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0001-7937-9014
Ronan ChaligneSingle-Cell Analytics Innovation Lab, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0003-4332-3291
Nicholas D SocciBioinformatics Core, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Michael D TaylorDepartment of Pediatrics-Hematology/Oncology and Neurosurgery, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0001-7009-3466
Claudia L KleinmanDepartment of Human Genetics, McGill University, Montreal, Quebec, Canada.ORCID 0000-0002-5158-7126
Alexandra L JoynerDevelopmental Biology Program, Sloan Kettering Institute, New York, NY, USA.ORCID 0000-0001-7090-9605
G Praveen RajuDepartments of Neurology and Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0003-1342-9132
Alex KentsisTow Center for Developmental Oncology, Department of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0002-8063-9191
Memorial Sloan Kettering Cancer Center · USIcahn School of Medicine at Mount Sinai · USNew York Genome Center · USJewish General Hospital · CABaylor College of Medicine · USCornell University · USKettering University · USMcGill University · CAThe Gurdon Institute · GBUniversity of Miami · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Structure and function of genome plasticity in human cancerR01CA214812 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI KENTSIS, ALEX · 2018 to 2022
$2.5M
Developmental studies to inform clinical stratification and targeting of SHH MBR01CA192176 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI JOYNER, ALEXANDRA L. · 2016 to 2020
$2.3M
NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA192176NCI NIH HHS R01 CA214812
6 · The paper itself

Abstract

Genomic rearrangements are a hallmark of most childhood tumors, including medulloblastoma, one of the most common brain tumors in children, but their causes remain largely unknown. Here, we show that PiggyBac transposable element derived 5 (Pgbd5) promotes tumor development in multiple developmentally accurate mouse models of Sonic Hedgehog (SHH) medulloblastoma. Most Pgbd5-deficient mice do not develop tumors, while maintaining normal cerebellar development. Ectopic activation of SHH signaling is sufficient to enforce cerebellar granule cell progenitor-like cell states, which exhibit Pgbd5-dependent expression of distinct DNA repair and neurodevelopmental factors. Mouse medulloblastomas expressing Pgbd5 have increased numbers of somatic structural DNA rearrangements, some of which carry PGBD5-specific sequences at their breakpoints. Similar sequence breakpoints recurrently affect somatic DNA rearrangements of known tumor suppressors and oncogenes in medulloblastomas in 329 children. This identifies PGBD5 as a medulloblastoma mutator and provides a genetic mechanism for the generation of oncogenic DNA rearrangements in childhood cancer.

Indexed as

Cerebellar NeoplasmsMedulloblastomaAnimalsChildHedgehog ProteinsHumansMiceMutagenesisTranscription FactorsTransposasesHedgehog ProteinsPGBD5 protein, humanTranscription FactorsTransposases

Identifiers

PMID38517960
PMCPMC10959420
OpenAlexW4393066418

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.