Evidence map›Paper›PMID 38517368›Full record

ArticleAging2024

Identification and validation of ferroptosis-related gene SLC2A1 as a novel prognostic biomarker in AKI.

Huaying Wang, Yuanyuan Li, Xinran Liu, Yonggui Wu

Open access · hybridAbstract read
In one paragraph

Article in Aging, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Huaying WangDepartment of Nephrology, The First Affiliated Hospital of Anhui Medical University, Hefei, Anhui 230022, PR China.
Yuanyuan LiDepartment of Nephrology, The First Affiliated Hospital of Anhui Medical University, Hefei, Anhui 230022, PR China.
Xinran LiuDepartment of Nephrology, The First Affiliated Hospital of Anhui Medical University, Hefei, Anhui 230022, PR China.
Yonggui WuDepartment of Nephrology, The First Affiliated Hospital of Anhui Medical University, Hefei, Anhui 230022, PR China.
First Affiliated Hospital of Anhui Medical University · CNAnhui Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEmerging evidence reveals the key role of ferroptosis in the pathophysiological process of acute kidney injury (AKI). Our study aimed to investigate the potential ferroptosis-related gene in AKI through bioinformatics and experimental validation.

methodsThe AKI single-cell sequencing dataset was retrieved from the GEO database and ferroptosis-related genes were extracted from the GENECARD website. The potential differentially expressed ferroptosis-related genes of AKI were selected. Functional enrichment analysis was performed. Machine learning algorithms were used to identify key ferroptosis-related genes associated with AKI. A multi-factor Cox regression analysis was used to construct a risk score model. The accuracy of the risk score model was validated using receiver operating characteristic (ROC) curve analysis. We extensively explored the immune landscape of AKI using CIBERSORT tool. Finally, expressions of ferroptosis DEGs were validated

resultsThree hub genes (BAP1, MDM4, SLC2A1) were identified and validated by constructing drug regulatory network and subsequent screening using experimentally determined interactions. The risk mode showed the low-risk group had significantly better prognosis compared to high-risk group. The risk score was independently associated with overall survival. The ROC curve analysis showed that the prognosis model had good predictive ability. Additionally, CIBERSORT immune infiltration analysis suggest that the hub gene may influence cell recruitment and infiltration in AKI. Validation experiments revealed that SLC2A1 functions by regulating ferroptosis.

conclusionsIn summary, our study not only identifies SLC2A1 as diagnostic biomarker for AKI, but also sheds light on the role of it in AKI progression, providing novel insights for the clinical diagnosis and treatment of AKI.

Indexed as

Acute Kidney InjuryFerroptosisAlgorithmsBiomarkersCell Cycle ProteinsGlucose Transporter Type 1HumansPrognosisProto-Oncogene ProteinsBiomarkersCell Cycle ProteinsGlucose Transporter Type 1MDM4 protein, humanProto-Oncogene ProteinsSLC2A1 protein, humanacute kidney injurybioinformatics analysisferroptosisprognosisSLC2A1

Identifiers

PMID38517368
PMCPMC11006501
OpenAlexW4392986346

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.