Evidence map›Paper›PMID 38516600›Full record

ArticleRSC medicinal chemistry2024

Chemical tools for the Gid4 subunit of the human E3 ligase C-terminal to LisH (CTLH) degradation complex.

Aliakbar Khalili Yazdi, Sumera Perveen, Cheng Dong, Xiaosheng Song, Aiping Dong, Magdalena M Szewczyk, Matthew F Calabrese, Agustin Casimiro-Garcia, Subramanyam Chakrapani, Matthew S Dowling and 16 more

Abstract read
In one paragraph

Article in RSC medicinal chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. The many faces of the GID/CTLH E3 ligase complex.Biochemical Society transactions · 2025
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Aliakbar Khalili YazdiStructural Genomics Consortium, University of Toronto Toronto ON Canada.
Sumera PerveenStructural Genomics Consortium, University of Toronto Toronto ON Canada.ORCID https://orcid.org/0000-0002-8898-9540
Cheng DongStructural Genomics Consortium, University of Toronto Toronto ON Canada.ORCID https://orcid.org/0000-0002-2891-8759
Xiaosheng SongStructural Genomics Consortium, University of Toronto Toronto ON Canada.ORCID https://orcid.org/0000-0003-0454-186X
Aiping DongStructural Genomics Consortium, University of Toronto Toronto ON Canada.ORCID https://orcid.org/0000-0002-4444-4012
Magdalena M SzewczykStructural Genomics Consortium, University of Toronto Toronto ON Canada.ORCID https://orcid.org/0000-0001-9243-1630
Matthew F CalabresePfizer Research & Development Groton CT USA.ORCID https://orcid.org/0000-0002-9394-3686
Agustin Casimiro-GarciaPfizer Research & Development Cambridge MA USA dafydd.owen@pfizer.com.ORCID https://orcid.org/0000-0001-9618-2547
Subramanyam ChakrapaniPfizer Research & Development Groton CT USA.
Matthew S DowlingPfizer Research & Development Groton CT USA.ORCID https://orcid.org/0000-0002-5140-764X
Emel FiciciPfizer Research & Development Groton CT USA.ORCID https://orcid.org/0000-0001-7265-3236
Jisun LeePfizer Research & Development Groton CT USA.ORCID https://orcid.org/0000-0003-1750-0063
Justin I MontgomeryPfizer Research & Development Groton CT USA.
Thomas N O'ConnellPfizer Research & Development Groton CT USA.
Grzegorz J SkrzypekPfizer Research & Development Groton CT USA.ORCID https://orcid.org/0009-0009-7860-7287
Tuan P TranPfizer Research & Development Groton CT USA.ORCID https://orcid.org/0000-0001-9578-639X
Matthew D TroutmanPfizer Research & Development Groton CT USA.
Feng WangPfizer Research & Development Groton CT USA.
Jennifer A YoungPfizer Research & Development Groton CT USA.
Jinrong MinStructural Genomics Consortium, University of Toronto Toronto ON Canada.
Dalia Barsyte-LovejoyStructural Genomics Consortium, University of Toronto Toronto ON Canada.ORCID https://orcid.org/0000-0002-6560-9621
Peter J BrownStructural Genomics Consortium, University of Toronto Toronto ON Canada.ORCID https://orcid.org/0000-0002-8454-0367
Vijayaratnam SanthakumarStructural Genomics Consortium, University of Toronto Toronto ON Canada.ORCID https://orcid.org/0000-0002-7001-557X
Cheryl H ArrowsmithStructural Genomics Consortium, University of Toronto Toronto ON Canada.ORCID https://orcid.org/0000-0002-4971-3250
Masoud VedadiStructural Genomics Consortium, University of Toronto Toronto ON Canada.ORCID https://orcid.org/0000-0002-0574-0169
Dafydd R OwenPfizer Research & Development Cambridge MA USA dafydd.owen@pfizer.com.ORCID https://orcid.org/0000-0003-3106-7809

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have developed a novel chemical handle (PFI-E3H1) and a chemical probe (PFI-7) as ligands for the Gid4 subunit of the human E3 ligase CTLH degradation complex. Through an efficient initial hit-ID campaign, structure-based drug design (SBDD) and leveraging the sizeable Pfizer compound library, we identified a 500 nM ligand for this E3 ligase through file screening alone. Further exploration identified a vector that is tolerant to addition of a linker for future chimeric molecule design. The chemotype was subsequently optimized to sub-100 nM Gid4 binding affinity for a chemical probe. These novel tools, alongside the suitable negative control also identified, should enable the interrogation of this complex human E3 ligase macromolecular assembly.

Identifiers

PMID38516600
PMCPMC10953471

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.