Evidence map›Paper›PMID 38514661›Full record

ArticleScientific reports2024

DiagSet: a dataset for prostate cancer histopathological image classification.

Michał Koziarski, Bogusław Cyganek, Przemysław Niedziela, Bogusław Olborski, Zbigniew Antosz, Marcin Żydak, Bogdan Kwolek, Paweł Wąsowicz, Andrzej Bukała, Jakub Swadźba and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
11.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 39 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Michał KoziarskiDiagnostyka Consilio Sp. z o.o., Ul. Kosynierów Gdyńskich 61a, 93-357, Łódż, Poland. michal.koziarski@gmail.com.
Bogusław CyganekDiagnostyka Consilio Sp. z o.o., Ul. Kosynierów Gdyńskich 61a, 93-357, Łódż, Poland.
Przemysław NiedzielaAGH University of Science and Technology, Al. Mickiewicza 30, 30-059, Kraków, Poland.
Bogusław OlborskiDiagnostyka Consilio Sp. z o.o., Ul. Kosynierów Gdyńskich 61a, 93-357, Łódż, Poland.
Zbigniew AntoszDiagnostyka Consilio Sp. z o.o., Ul. Kosynierów Gdyńskich 61a, 93-357, Łódż, Poland.
Marcin ŻydakDiagnostyka Consilio Sp. z o.o., Ul. Kosynierów Gdyńskich 61a, 93-357, Łódż, Poland.
Bogdan KwolekDiagnostyka Consilio Sp. z o.o., Ul. Kosynierów Gdyńskich 61a, 93-357, Łódż, Poland.
Paweł WąsowiczDiagnostyka Consilio Sp. z o.o., Ul. Kosynierów Gdyńskich 61a, 93-357, Łódż, Poland.
Andrzej BukałaAGH University of Science and Technology, Al. Mickiewicza 30, 30-059, Kraków, Poland.
Jakub SwadźbaDiagnostyka Consilio Sp. z o.o., Ul. Kosynierów Gdyńskich 61a, 93-357, Łódż, Poland.
Piotr SitkowskiDiagnostyka Consilio Sp. z o.o., Ul. Kosynierów Gdyńskich 61a, 93-357, Łódż, Poland.
AGH University of Krakow · PLAndrzej Frycz Modrzewski Krakow University · PLGdynia Maritime University · PL

Funding

National Center for Research and Development grant no. POIR.01.01.01-00-0861/16-00
6 · The paper itself

Abstract

Cancer diseases constitute one of the most significant societal challenges. In this paper, we introduce a novel histopathological dataset for prostate cancer detection. The proposed dataset, consisting of over 2.6 million tissue patches extracted from 430 fully annotated scans, 4675 scans with assigned binary diagnoses, and 46 scans with diagnoses independently provided by a group of histopathologists can be found at https://github.com/michalkoziarski/DiagSet . Furthermore, we propose a machine learning framework for detection of cancerous tissue regions and prediction of scan-level diagnosis, utilizing thresholding to abstain from the decision in uncertain cases. The proposed approach, composed of ensembles of deep neural networks operating on the histopathological scans at different scales, achieves 94.6% accuracy in patch-level recognition and is compared in a scan-level diagnosis with 9 human histopathologists showing high statistical agreement.

Indexed as

Neural Networks, ComputerProstatic NeoplasmsHumansMachine LearningMalePathologistsProstate

Identifiers

PMID38514661
PMCPMC10958036
OpenAlexW3163753640

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.