Evidence map›Paper›PMID 38513017›Full record

ArticleScience (New York, N.Y.)2024

Efficient formation of single-copy human artificial chromosomes.

Craig W Gambogi, Gabriel J Birchak, Elie Mer, David M Brown, George Yankson, Kathryn Kixmoeller, Janardan N Gavade, Josh L Espinoza, Prakriti Kashyap, Chris L Dupont and 4 more

Erratum issuedAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. B chromosomes put the 'super' in supernumerary.Trends in genetics : TIG · 2026
    Review
  2. Review
  3. Review
  4. Article
  5. The Promise of Synthetic Biology for Redesigning Plant Architecture.International journal of molecular sciences · 2026
    Review
  6. Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. 40 years of CENP-A: the foundation of a new era of centromere biology.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Article
  12. Rapid assembly of functional modules for generating human artificial chromosome constructs compatible with epigenetic centromere seeding.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Article
  13. The dynamic centromere.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  14. Article
  15. Centromere regulation in the germline and early embryo.Current opinion in genetics & development · 2025
    Review
  16. Article
  17. The Hallmarks of Aneuploidy in Cancer and Congenital Syndromes.Annual review of genomics and human genetics · 2025
    Review
  18. Sterility and structural variation in an arabidopsis pedigree carrying a ring minichromosome.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Article
  19. Article
  20. The design and engineering of synthetic genomes.Nature reviews. Genetics · 2025
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Craig W GambogiDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0001-7118-8942
Gabriel J BirchakDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0002-0546-2357
Elie MerDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0003-2339-9547
David M BrownJ. Craig Venter Institute, La Jolla, CA 92037, USA.
George YanksonWellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK.ORCID 0000-0002-2928-4946
Kathryn KixmoellerDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0002-7996-0279
Janardan N GavadeDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0002-4452-5699
Josh L EspinozaJ. Craig Venter Institute, La Jolla, CA 92037, USA.ORCID 0000-0003-3447-3845
Prakriti KashyapDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0002-2704-6450
Chris L DupontJ. Craig Venter Institute, La Jolla, CA 92037, USA.ORCID 0000-0002-0896-6542
Glennis A LogsdonDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0003-2396-0656
Patrick HeunWellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK.ORCID 0000-0001-8400-1892
John I GlassJ. Craig Venter Institute, La Jolla, CA 92037, USA.ORCID 0000-0002-3784-5301
Ben E BlackDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0002-3707-9483

Funding

TRAINING PROGRAM IN CELL AND MOLECULAR BIOLOGYT32GM007229 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BARTOLOMEI, MARISA S. · 1985 to 2023
$14.0M
Mendelian inheritance of artificial chromosomesR01HG012445 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI BLACK, BEN E., LAMPSON, MICHAEL · 2021 to 2025
$5.8M
Centromere identity, strength, and regulationR35GM130302 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Ben E. Black · 2019 to 2026
$4.3M
Investigating the structure and function of the human centromere and kinetochoreF30CA261198 · NCI · UNIVERSITY OF PENNSYLVANIA · PI KIXMOELLER, KATHRYN · 2021 to 2024
$163k
NCI NIH HHS F30 CA261198NHGRI NIH HHS R01 HG012445NIGMS NIH HHS R35 GM130302NIGMS NIH HHS T32 GM007229
6 · The paper itself

Abstract

Large DNA assembly methodologies underlie milestone achievements in synthetic prokaryotic and budding yeast chromosomes. While budding yeast control chromosome inheritance through ~125-base pair DNA sequence-defined centromeres, mammals and many other eukaryotes use large, epigenetic centromeres. Harnessing centromere epigenetics permits human artificial chromosome (HAC) formation but is not sufficient to avoid rampant multimerization of the initial DNA molecule upon introduction to cells. We describe an approach that efficiently forms single-copy HACs. It employs a ~750-kilobase construct that is sufficiently large to house the distinct chromatin types present at the inner and outer centromere, obviating the need to multimerize. Delivery to mammalian cells is streamlined by employing yeast spheroplast fusion. These developments permit faithful chromosome engineering in the context of metazoan cells.

Indexed as

CentromereChromosomes, Artificial, HumanEpigenesis, GeneticChromatinHumansSaccharomycetalesChromatin

Identifiers

PMID38513017
PMCPMC11059994

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.