Evidence map›Paper›PMID 38512979›Full record

ArticlePLoS pathogens2024

Autoimmunity-associated allele of tyrosine phosphatase gene PTPN22 enhances anti-viral immunity.

Robin C Orozco, Kristi Marquardt, Isaraphorn Pratumchai, Anam Fatima Shaikh, Kerri Mowen, Alain Domissy, John R Teijaro, Linda A Sherman

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. An autoimmunity-associated allele ofProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Article
  4. An Autoimmunity-associated allele ofbioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Review
  7. Autoimmunity: the neoantigen hypothesis.Frontiers in immunology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Robin C OrozcoDepartment of Immunology and Microbiology, Scripps Research, La Jolla, California, United States of America.ORCID 0000-0002-2138-2912
Kristi MarquardtDepartment of Immunology and Microbiology, Scripps Research, La Jolla, California, United States of America.
Isaraphorn PratumchaiDepartment of Immunology and Microbiology, Scripps Research, La Jolla, California, United States of America.
Anam Fatima ShaikhDepartment of Molecular Biosciences, University of Kansas, Lawrence, Kansas, United States of America.
Kerri MowenDepartment of Immunology and Microbiology, Scripps Research, La Jolla, California, United States of America.
Alain DomissyGenomics Core, Scripps Research, La Jolla, California, United States of America.
John R TeijaroDepartment of Immunology and Microbiology, Scripps Research, La Jolla, California, United States of America.
Linda A ShermanDepartment of Immunology and Microbiology, Scripps Research, La Jolla, California, United States of America.
Scripps Institution of Oceanography · USUniversity of Kansas · US

Funding

Synthetic Chemical Biology CoreP20GM113117 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI OROZCO, ROBIN C. · 2016 to 2025
$23.9M
MOLECULAR BASIS OF VIRAL PATHOGENESIST32AI007354 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI DE LA TORRE, JUAN C. · 1989 to 2020
$5.2M
PTPN22 R619W in NOD miceU01AI130842 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI SHERMAN, LINDA A · 2017 to 2021
$3.8M
The role of IL-27 in sustaining the exhausted CD8 T cell response to persistent infection and cancer.R01AI164744 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI TEIJARO, JOHN ROSS · 2021 to 2025
$2.7M
NIAID NIH HHS R01 AI164744NIAID NIH HHS T32 AI007354NIAID NIH HHS U01 AI130842NIGMS NIH HHS P20 GM113117
6 · The paper itself

Abstract

The 1858C>T allele of the tyrosine phosphatase PTPN22 is present in 5-10% of the North American population and is strongly associated with numerous autoimmune diseases. Although research has been done to define how this allele potentiates autoimmunity, the influence PTPN22 and its pro-autoimmune allele has in anti-viral immunity remains poorly defined. Here, we use single cell RNA-sequencing and functional studies to interrogate the impact of this pro-autoimmune allele on anti-viral immunity during Lymphocytic Choriomeningitis Virus clone 13 (LCMV-cl13) infection. Mice homozygous for this allele (PEP-619WW) clear the LCMV-cl13 virus whereas wildtype (PEP-WT) mice cannot. This is associated with enhanced anti-viral CD4 T cell responses and a more immunostimulatory CD8α- cDC phenotype. Adoptive transfer studies demonstrated that PEP-619WW enhanced anti-viral CD4 T cell function through virus-specific CD4 T cell intrinsic and extrinsic mechanisms. Taken together, our data show that the pro-autoimmune allele of Ptpn22 drives a beneficial anti-viral immune response thereby preventing what is normally a chronic virus infection.

Indexed as

Autoimmune DiseasesLymphocytic ChoriomeningitisAllelesAnimalsAutoimmunityMicePhosphoric Monoester HydrolasesProtein Tyrosine Phosphatase, Non-Receptor Type 22TyrosinePhosphoric Monoester HydrolasesProtein Tyrosine Phosphatase, Non-Receptor Type 22Ptpn22 protein, mouseTyrosine

Identifiers

PMID38512979
PMCPMC10987006
OpenAlexW4393036361

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.