Evidence map›Paper›PMID 38512960›Full record

Observational studyPloS one2024

COVID-19 in non-hospitalised adults caused by either SARS-CoV-2 sub-variants Omicron BA.1, BA.2, BA.4/5 or Delta associates with similar illness duration, symptom severity and viral kinetics, irrespective of vaccination history.

Hermaleigh Townsley, Joshua Gahir, Timothy W Russell, David Greenwood, Edward J Carr, Matala Dyke, Lorin Adams, Murad Miah, Bobbi Clayton, Callie Smith and 27 more

Registry-linked trialOpen access · goldAbstract readObservational Study
In one paragraph

Observational study in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04750356 (SARS-CoV-2 Longitudinal Study), which is not on this map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04750356 unknown statusnot on this map

SARS-CoV-2 Longitudinal Study: Understanding Susceptibility, Transmission and Disease Severity

TypeobservationalSponsorUniversity College, LondonRan2021 to 2024Enrolled6,000ConditionsSARS-CoV Infection
3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Recent Vaccination Against SARS-CoV-2 Is Associated with Less Severe Disease in Working-Age Adults.International journal of environmental research and public health · 2024
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors at 2 institutions in 1 country.

Hermaleigh TownsleyThe Francis Crick Institute, London, United Kingdom.
Joshua GahirThe Francis Crick Institute, London, United Kingdom.
Timothy W RussellCentre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.ORCID 0000-0001-5610-6080
David GreenwoodThe Francis Crick Institute, London, United Kingdom.
Edward J CarrThe Francis Crick Institute, London, United Kingdom.ORCID 0000-0001-9343-4593
Matala DykeThe Francis Crick Institute, London, United Kingdom.
Lorin AdamsWorldwide Influenza Centre, The Francis Crick Institute, London, United Kingdom.ORCID 0000-0001-8357-2327
Murad MiahThe Francis Crick Institute, London, United Kingdom.
Bobbi ClaytonThe Francis Crick Institute, London, United Kingdom.
Callie SmithThe Francis Crick Institute, London, United Kingdom.ORCID 0000-0001-9147-951X
Mauro MirandaThe Francis Crick Institute, London, United Kingdom.ORCID 0000-0001-5618-883X
Harriet V MearsThe Francis Crick Institute, London, United Kingdom.
Chris BaileyThe Francis Crick Institute, London, United Kingdom.
James R M BlackThe Francis Crick Institute, London, United Kingdom.
Ashley S FowlerThe Francis Crick Institute, London, United Kingdom.
Margaret CrawfordThe Francis Crick Institute, London, United Kingdom.
Katalin WilkinsonThe Francis Crick Institute, London, United Kingdom.ORCID 0000-0002-9796-2040
Matthew HutchinsonThe Francis Crick Institute, London, United Kingdom.
Ruth HarveyThe Francis Crick Institute, London, United Kingdom.
Nicola O'ReillyThe Francis Crick Institute, London, United Kingdom.
Gavin KellyThe Francis Crick Institute, London, United Kingdom.
Robert GoldstoneThe Francis Crick Institute, London, United Kingdom.
Rupert BealeThe Francis Crick Institute, London, United Kingdom.
Padmasayee PapineniLondon Northwest University Healthcare NHS Trust, London, United Kingdom.
Tumena CorrahLondon Northwest University Healthcare NHS Trust, London, United Kingdom.
Richard GilsonCamden and North West London NHS Community Trust, London, United Kingdom.
Simon CaidanThe Francis Crick Institute, London, United Kingdom.
Jerome NicodThe Francis Crick Institute, London, United Kingdom.ORCID 0000-0003-2459-3480
Steve GamblinThe Francis Crick Institute, London, United Kingdom.
George KassiotisThe Francis Crick Institute, London, United Kingdom.ORCID 0000-0002-8457-2633
Vincenzo LibriNational Institute for Health Research (NIHR) University College London Hospitals (UCLH) Biomedical Research Centre and NIHR UCLH Clinical Research Facility, London, United Kingdom.
Bryan WilliamsNational Institute for Health Research (NIHR) University College London Hospitals (UCLH) Biomedical Research Centre and NIHR UCLH Clinical Research Facility, London, United Kingdom.
Sonia GandhiThe Francis Crick Institute, London, United Kingdom.
Adam J KucharskiCentre for Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.
Charles SwantonThe Francis Crick Institute, London, United Kingdom.
David L V BauerThe Francis Crick Institute, London, United Kingdom.ORCID 0000-0003-3052-0368
Emma C WallThe Francis Crick Institute, London, United Kingdom.ORCID 0000-0003-2732-4497
The Francis Crick Institute · GBLondon School of Hygiene & Tropical Medicine · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSARS-CoV-2 variant Omicron rapidly evolved over 2022, causing three waves of infection due to sub-variants BA.1, BA.2 and BA.4/5. We sought to characterise symptoms and viral loads over the course of COVID-19 infection with these sub-variants in otherwise-healthy, vaccinated, non-hospitalised adults, and compared data to infections with the preceding Delta variant of concern (VOC).

methodsIn a prospective, observational cohort study, healthy vaccinated UK adults who reported a positive polymerase chain reaction (PCR) or lateral flow test, self-swabbed on alternate weekdays until day 10. We compared participant-reported symptoms and viral load trajectories between infections caused by VOCs Delta and Omicron (sub-variants BA.1, BA.2 or BA.4/5), and tested for relationships between vaccine dose, symptoms and PCR cycle threshold (Ct) as a proxy for viral load using Chi-squared (χ2) and Wilcoxon tests.

results563 infection episodes were reported among 491 participants. Across infection episodes, there was little variation in symptom burden (4 [IQR 3-5] symptoms) and duration (8 [IQR 6-11] days). Whilst symptom profiles differed among infections caused by Delta compared to Omicron sub-variants, symptom profiles were similar between Omicron sub-variants. Anosmia was reported more frequently in Delta infections after 2 doses compared with Omicron sub-variant infections after 3 doses, for example: 42% (25/60) of participants with Delta infection compared to 9% (6/67) with Omicron BA.4/5 (χ2 P < 0.001; OR 7.3 [95% CI 2.7-19.4]). Fever was less common with Delta (20/60 participants; 33%) than Omicron BA.4/5 (39/67; 58%; χ2 P = 0.008; OR 0.4 [CI 0.2-0.7]). Amongst infections with an Omicron sub-variants, symptoms of coryza, fatigue, cough and myalgia predominated. Viral load trajectories and peaks did not differ between Delta, and Omicron, irrespective of symptom severity (including asymptomatic participants), VOC or vaccination status. PCR Ct values were negatively associated with time since vaccination in participants infected with BA.1 (β = -0.05 (CI -0.10-0.01); P = 0.031); however, this trend was not observed in BA.2 or BA.4/5 infections.

conclusionOur study emphasises both the changing symptom profile of COVID-19 infections in the Omicron era, and ongoing transmission risk of Omicron sub-variants in vaccinated adults.

trial registrationNCT04750356.

Indexed as

COVID-19AdultHumansProspective StudiesSARS-CoV-2Vaccination

Identifiers

PMID38512960
PMCPMC10956747
OpenAlexW4393063351

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.