Evidence map›Paper›PMID 38511490›Full record

ArticleProtein science : a publication of the Protein Society2024

Disrupted protein interaction dynamics in a genetic neurodevelopmental disorder revealed by structural bioinformatics and genetic code expansion.

Valerio Marino, Wanchana Phromkrasae, Michele Bertacchi, Paul Cassini, Krittalak Chakrabandhu, Daniele Dell'Orco, Michèle Studer

Open access · hybridAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Recent progress and future challenges in structure-based protein-protein interaction prediction.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Valerio MarinoDepartment of Neurosciences, Biomedicine and Movement Sciences, Section of Biological Chemistry, University of Verona, Verona, Italy.
Wanchana PhromkrasaeUniversity Côte d'Azur, CNRS, Inserm, iBV, Nice, France.
Michele BertacchiUniversity Côte d'Azur, CNRS, Inserm, iBV, Nice, France.
Paul CassiniUniversity Côte d'Azur, CNRS, Inserm, iBV, Nice, France.
Krittalak ChakrabandhuUniversity Côte d'Azur, CNRS, Inserm, iBV, Nice, France.
Daniele Dell'OrcoDepartment of Neurosciences, Biomedicine and Movement Sciences, Section of Biological Chemistry, University of Verona, Verona, Italy.
Michèle StuderUniversity Côte d'Azur, CNRS, Inserm, iBV, Nice, France.ORCID 0000-0001-7105-2957
Centre National de la Recherche Scientifique · FRUniversity of Verona · IT

Funding

Agence Nationale de la Recherche ANR-15-IDEX-01ERA-NET Neuron ANR-21-NEU2-0003-03Fondation de France #00123416Fondation pour la Recherche Médicale #EQU202003010222Italian Ministry of Education, University and Research under the PON R&I 2014-2020 programme (FSE React-EU)Next Generation EU/Ministry of University CUP B33C22001060002Next Generation EU/Ministry of University PE00000006 missione 4
6 · The paper itself

Abstract

Deciphering the structural effects of gene variants is essential for understanding the pathophysiological mechanisms of genetic diseases. Using a neurodevelopmental disorder called Bosch-Boonstra-Schaaf Optic Atrophy Syndrome (BBSOAS) as a genetic disease model, we applied structural bioinformatics and Genetic Code Expansion (GCE) strategies to assess the pathogenic impact of human NR2F1 variants and their binding with known and novel partners. While the computational analyses of the NR2F1 structure delineated the molecular basis of the impact of several variants on the isolated and complexed structures, the GCE enabled covalent and site-specific capture of transient supramolecular interactions in living cells. This revealed the variable quaternary conformations of NR2F1 variants and highlighted the disrupted interplay with dimeric partners and the newly identified co-factor, CRABP2. The disclosed consequence of the pathogenic mutations on the conformation, supramolecular interplay, and alterations in the cell cycle, viability, and sub-cellular localization of the different variants reflect the heterogeneous disease spectrum of BBSOAS and set up novel foundation for unveiling the complexity of neurodevelopmental diseases.

Indexed as

Intellectual DisabilityGenetic CodeHumansMutationBBSOAScellular biologyCRABP2genetic code expansionligand binding domainNR2F1pathogenic variantsprotein interactionsprotein stability and affinitystructural biochemistry

Identifiers

PMID38511490
PMCPMC10955615
OpenAlexW4393045355

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.