Evidence map›Paper›PMID 38510116›Full record

ArticleiScience2024

Identifying therapeutic candidates for endometriosis through a transcriptomics-based drug repositioning approach.

Tomiko T Oskotsky, Arohee Bhoja, Daniel Bunis, Brian L Le, Alice S Tang, Idit Kosti, Christine Li, Sahar Houshdaran, Sushmita Sen, Júlia Vallvé-Juanico and 11 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The Impact of Endometriosis on Ovarian Reserve: A Systematic Review.International journal of women's health · 2026
    Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Pathogenesis of Endometriosis and Endometriosis-Associated Cancers.International journal of molecular sciences · 2024
    Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 1 country.

Tomiko T OskotskyBakar Computational Health Sciences Institute, UCSF, San Francisco, CA, USA.
Arohee BhojaBakar Computational Health Sciences Institute, UCSF, San Francisco, CA, USA.
Daniel BunisBakar Computational Health Sciences Institute, UCSF, San Francisco, CA, USA.
Brian L LeBakar Computational Health Sciences Institute, UCSF, San Francisco, CA, USA.
Alice S TangBakar Computational Health Sciences Institute, UCSF, San Francisco, CA, USA.
Idit KostiBakar Computational Health Sciences Institute, UCSF, San Francisco, CA, USA.
Christine LiBakar Computational Health Sciences Institute, UCSF, San Francisco, CA, USA.
Sahar HoushdaranDepartment of Obstetrics, Gynecology and Reproductive Sciences, UCSF, San Francisco, CA, USA.
Sushmita SenDepartment of Obstetrics, Gynecology and Reproductive Sciences, UCSF, San Francisco, CA, USA.
Júlia Vallvé-JuanicoDepartment of Obstetrics, Gynecology and Reproductive Sciences, UCSF, San Francisco, CA, USA.
Wanxin WangDepartment of Obstetrics, Gynecology and Reproductive Sciences, UCSF, San Francisco, CA, USA.
Erin ArthursDepartment of Gynecology and Obstetrics, Emory University, Atlanta, GA, USA.
Arpita GovilDepartment of Gynecology and Obstetrics, Emory University, Atlanta, GA, USA.
Lauren MahoneyDepartment of Gynecology and Obstetrics, Emory University, Atlanta, GA, USA.
Lindsey LangDepartment of Gynecology and Obstetrics, Emory University, Atlanta, GA, USA.
Brice GaudilliereDepartment of Anesthesiology, Pain and Perioperative Medicine, Stanford University, Stanford, CA, USA.
David K StevensonDepartment of Pediatrics, Stanford University, Stanford, CA, USA.
Juan C IrwinDepartment of Obstetrics, Gynecology and Reproductive Sciences, UCSF, San Francisco, CA, USA.
Linda C GiudiceDepartment of Obstetrics, Gynecology and Reproductive Sciences, UCSF, San Francisco, CA, USA.
Stacy L McAllisterDepartment of Gynecology and Obstetrics, Emory University, Atlanta, GA, USA.
Marina SirotaBakar Computational Health Sciences Institute, UCSF, San Francisco, CA, USA.
Emory University · USCarnegie Mellon University · USStanford Medicine · USStanford University · US

Funding

Project 4: Human Endometrial Programming for Successful ImplantationP50HD055764 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BLELLOCH, ROBERT · 2014 to 2022
$16.4M
UCSF Stanford Endometriosis Center for Discovery, Innovation, Training and Community EngagementP01HD106414 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GAUDILLIERE, BRICE, GIUDICE, LINDA C · 2021 to 2025
$7.1M
Targeting Reactive Aldehyde Metabolism in Endometriosis as a treatment strategy and a Diagnostic BiomarkerR00HD093858 · NICHD · EMORY UNIVERSITY · PI MCALLISTER, STACY L · 2019 to 2021
$686k
NICHD NIH HHS P01 HD106414NICHD NIH HHS P50 HD055764NICHD NIH HHS R00 HD093858
6 · The paper itself

Abstract

Existing medical treatments for endometriosis-related pain are often ineffective, underscoring the need for new therapeutic strategies. In this study, we applied a computational drug repurposing pipeline to stratified and unstratified disease signatures based on endometrial gene expression data to identify potential therapeutics from existing drugs, based on expression reversal. Of 3,131 unique genes differentially expressed by at least one of six endometriosis signatures, only 308 (9.8%) were in common; however, 221 out of 299 drugs identified, (73.9%) were shared. We selected fenoprofen, an uncommonly prescribed NSAID that was the top therapeutic candidate for further investigation. When testing fenoprofen in an established rat model of endometriosis, fenoprofen successfully alleviated endometriosis-associated vaginal hyperalgesia, a surrogate marker for endometriosis-related pain. These findings validate fenoprofen as a therapeutic that could be utilized more frequently for endometriosis and suggest the utility of the aforementioned computational drug repurposing approach for endometriosis.

Indexed as

DrugsTranscriptomics

Identifiers

PMID38510116
PMCPMC10952035
OpenAlexW4392765049

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.