Evidence map›Paper›PMID 38509465›Full record

ArticleBMC plant biology2024

Genome-wide characterization of the bHLH gene family in Gynostemma pentaphyllum reveals its potential role in the regulation of gypenoside biosynthesis.

Yanhong Qin, Jinmei Li, Jianhua Chen, Shaochang Yao, Liangbo Li, Rongshao Huang, Yong Tan, Ruhong Ming, Ding Huang

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Comprehensive Genome-Wide Identification and Expression Profiling ofInternational journal of molecular sciences · 2024
    Article
  6. Genome-Wide Identification of the bHLH Gene Family inInternational journal of molecular sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Yanhong Qin *College of Pharmacy, Guangxi University of Chinese Medicine, Nanning, 530200, China.
Jinmei Li *College of Pharmacy, Guangxi University of Chinese Medicine, Nanning, 530200, China.
Jianhua ChenCollege of Pharmacy, Guangxi University of Chinese Medicine, Nanning, 530200, China.
Shaochang YaoCollege of Pharmacy, Guangxi University of Chinese Medicine, Nanning, 530200, China.
Liangbo LiCollege of Pharmacy, Guangxi University of Chinese Medicine, Nanning, 530200, China.
Rongshao HuangCollege of Pharmacy, Guangxi University of Chinese Medicine, Nanning, 530200, China.
Yong TanCollege of Pharmacy, Guangxi University of Chinese Medicine, Nanning, 530200, China.
Ruhong MingCollege of Pharmacy, Guangxi University of Chinese Medicine, Nanning, 530200, China. mingrh@gxtcmu.edu.cn.ORCID http://orcid.org/0000-0001-8449-1609
Ding HuangCollege of Pharmacy, Guangxi University of Chinese Medicine, Nanning, 530200, China. hdh016@126.com.ORCID http://orcid.org/0000-0003-0826-1101
Guangxi University · CN

Funding

Natural Science Foundation of Guangxi Zhuang Autonomous Region 2020GXNSFBA297025Postgraduate Joint Training base of Guangxi Guixuewei [2021] No. 6'Xinglin' Youth Talent of Guangxi University of Chinese Medicine Project Fund 2022C031
6 · The paper itself

Abstract

backgroundGynostemma pentaphyllum, an ancient Chinese herbal medicine, serves as a natural source of gypenosides with significant medicinal properties. Basic helix-loop-helix (bHLH) transcription factors play pivotal roles in numerous biological processes, especially in the regulation of secondary metabolism in plants. However, the characteristics and functions of the bHLH genes in G. pentaphyllum remain unexplored, and their regulatory role in gypenoside biosynthesis remains poorly elucidated.

resultsThis study identified a total of 111 bHLH members in G. pentaphyllum (GpbHLHs), categorizing them into 26 subgroups based on shared conserved motif compositions and gene structures. Collinearity analysis illustrated that segmental duplications predominately lead to the evolution of GpbHLHs, with most duplicated GpbHLH gene pairs undergoing purifying selection. Among the nine gypenoside-related GpbHLH genes, two GpbHLHs (GpbHLH15 and GpbHLH58) were selected for further investigation based on co-expression analysis and functional prediction. The expression of these two selected GpbHLHs was dramatically induced by methyl jasmonate, and their nuclear localization was confirmed. Furthermore, yeast one-hybrid and dual-luciferase assays demonstrated that GpbHLH15 and GpbHLH58 could bind to the promoters of the gypenoside biosynthesis pathway genes, such as GpFPS1, GpSS1, and GpOSC1, and activate their promoter activity to varying degrees.

conclusionsIn conclusion, our findings provide a detailed analysis of the bHLH family and valuable insights into the potential use of GpbHLHs to enhance the accumulation of gypenosides in G. pentaphyllum.

Indexed as

GynostemmaPlant ExtractsBasic Helix-Loop-Helix ProteinsBasic Helix-Loop-Helix ProteinsgypenosidePlant ExtractsBasic helix-loop-helixGenome-wide characterizationGynostemma pentaphyllumGypenoside biosynthesisTranscription factor

Identifiers

PMID38509465
PMCPMC10953245
OpenAlexW4393008861

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.