Evidence map›Paper›PMID 38509386›Full record

ArticleNature genetics2024

The homeobox transcription factor DUXBL controls exit from totipotency.

Maria Vega-Sendino, Felipe F Lüttmann, Teresa Olbrich, Yanpu Chen, Carsten Kuenne, Paula Stein, Desiree Tillo, Grace I Carey, Jiasheng Zhong, Virginia Savy and 17 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Exit from totipotency in mammals: an epigenetic perspective.Frontiers in cell and developmental biology · 2026
    Review
  9. Article
  10. Gene and Genome Duplication in Spiders.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2025
    Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Mouse and human embryonic genome activation initiate at the one-cell stage.Frontiers in cell and developmental biology · 2025
    Article
  19. Review
  20. Spliceosomal repression: unleashing human cell totipotency.Signal transduction and targeted therapy · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 10 institutions in 4 countries.

Maria Vega-Sendino *Laboratory of Genome Integrity, CCR, NCI, NIH, Bethesda, MD, USA.ORCID http://orcid.org/0000-0001-8179-6335
Felipe F Lüttmann *Max-Planck-Institute for Heart and Lung Research, Bad Nauheim, Germany.ORCID http://orcid.org/0000-0003-1864-3525
Teresa OlbrichLaboratory of Genome Integrity, CCR, NCI, NIH, Bethesda, MD, USA.
Yanpu ChenMax-Planck-Institute for Heart and Lung Research, Bad Nauheim, Germany.
Carsten KuenneBioinformatics Core Unit (BCU), Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.ORCID http://orcid.org/0000-0001-8013-5906
Paula SteinReproductive and Developmental Biology Laboratory, NIEHS, NIH, Research Triangle Park, NC, USA.ORCID http://orcid.org/0000-0002-2040-4593
Desiree TilloGenetics Branch, CCR, NCI, NIH, Bethesda, MD, USA.ORCID http://orcid.org/0000-0003-3568-6148
Grace I CareyLaboratory of Genome Integrity, CCR, NCI, NIH, Bethesda, MD, USA.
Jiasheng ZhongMax-Planck-Institute for Heart and Lung Research, Bad Nauheim, Germany.ORCID http://orcid.org/0000-0001-6864-2294
Virginia SavyReproductive and Developmental Biology Laboratory, NIEHS, NIH, Research Triangle Park, NC, USA.
Lenka RadonovaReproductive and Developmental Biology Laboratory, NIEHS, NIH, Research Triangle Park, NC, USA.
Tianlin LuMax-Planck-Institute for Heart and Lung Research, Bad Nauheim, Germany.
Bechara SaykaliLaboratory of Genome Integrity, CCR, NCI, NIH, Bethesda, MD, USA.
Kee-Pyo KimDepartment of Cell and Developmental Biology, Max Planck Institute for Molecular Biomedicine, Münster, Germany.ORCID http://orcid.org/0000-0002-8666-8444
Catherine N DomingoLaboratory of Genome Integrity, CCR, NCI, NIH, Bethesda, MD, USA.
Leah SchülerMax-Planck-Institute for Heart and Lung Research, Bad Nauheim, Germany.ORCID http://orcid.org/0000-0001-5436-8212
Stefan GüntherMax-Planck-Institute for Heart and Lung Research, Bad Nauheim, Germany.ORCID http://orcid.org/0000-0002-5594-4549
Mette BentsenBioinformatics Core Unit (BCU), Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.ORCID http://orcid.org/0000-0002-8016-0199
Darko BosnakovskiLillehei Heart Institute, Department of Pediatrics, University of Minnesota, Minneapolis, USA.ORCID http://orcid.org/0000-0002-7198-2019
Hans SchölerDepartment of Cell and Developmental Biology, Max Planck Institute for Molecular Biomedicine, Münster, Germany.
Michael KybaLillehei Heart Institute, Department of Pediatrics, University of Minnesota, Minneapolis, USA.ORCID http://orcid.org/0000-0002-5579-7534
Tapan K MaityLaboratory of Cell Biology, CCR, NCI, NIH, Bethesda, MD, USA.
Lisa M JenkinsLaboratory of Cell Biology, CCR, NCI, NIH, Bethesda, MD, USA.ORCID http://orcid.org/0000-0003-1245-1338
Mario LoosoCardio-Pulmonary Institute, Frankfurt, Germany.ORCID http://orcid.org/0000-0003-1495-9530
Carmen J WilliamsReproductive and Developmental Biology Laboratory, NIEHS, NIH, Research Triangle Park, NC, USA.ORCID http://orcid.org/0000-0001-6440-7086
Johnny KimMax-Planck-Institute for Heart and Lung Research, Bad Nauheim, Germany. johnny.kim@tron-mainz.de.ORCID http://orcid.org/0000-0002-5226-5460
Sergio RuizLaboratory of Genome Integrity, CCR, NCI, NIH, Bethesda, MD, USA. sergio.ruizmacias@nih.gov.ORCID http://orcid.org/0000-0002-0177-6965
Max Planck Institute for Heart and Lung Research · DENational Human Genome Research Institute · USResearch Triangle Park Foundation · USCenter for Cancer Research · USMax Planck Institute for Molecular Biomedicine · DEUniversity of Minnesota · USGerman Cancer Research Center · DEGerman Centre for Cardiovascular Research · DEJohannes Gutenberg University Mainz · DESecond Affiliated Hospital of Guangzhou Medical University · CN

Funding

Environmental influence on gametes and embryosZIAES102985 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI WILLIAMS, CARMEN · 2011 to 2025
$20.9M
CCR Genomics CoreZICBC011623 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI CONNER, ELIZABETH · 2015 to 2025
$20.5M
CPTR - Mass Spectrometry UnitZICBC011430 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI JENKINS, LISA · 2012 to 2025
$9.4M
Molecular Determinants of TotipotencyZIABC011813 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI RUIZ, SERGIO · 2018 to 2025
$3.0M
To explore the molecular and cellular effects of transient DUX4 expression in skeletal muscleR01AR081228 · NIAMS · UNIVERSITY OF MINNESOTA · PI Darko Bosnakovski · 2022 to 2026
$1.6M
Intramural NIH HHS ZIA BC011813NIAMS NIH HHS R01 AR081228
6 · The paper itself

Abstract

In mice, exit from the totipotent two-cell (2C) stage embryo requires silencing of the 2C-associated transcriptional program. However, the molecular mechanisms involved in this process remain poorly understood. Here we demonstrate that the 2C-specific transcription factor double homeobox protein (DUX) mediates an essential negative feedback loop by inducing the expression of DUXBL to promote this silencing. We show that DUXBL gains accessibility to DUX-bound regions specifically upon DUX expression. Furthermore, we determine that DUXBL interacts with TRIM24 and TRIM33, members of the TRIM superfamily involved in gene silencing, and colocalizes with them in nuclear foci upon DUX expression. Importantly, DUXBL overexpression impairs 2C-associated transcription, whereas Duxbl inactivation in mouse embryonic stem cells increases DUX-dependent induction of the 2C-transcriptional program. Consequently, DUXBL deficiency in embryos results in sustained expression of 2C-associated transcripts leading to early developmental arrest. Our study identifies DUXBL as an essential regulator of totipotency exit enabling the first divergence of cell fates.

Indexed as

Genes, HomeoboxHomeodomain ProteinsMouse Embryonic Stem CellsTranscription FactorsAnimalsCell DifferentiationGene Expression RegulationGene Expression Regulation, DevelopmentalMiceDuxbl protein, mouseHomeodomain ProteinsTranscription Factors

Identifiers

PMID38509386
PMCPMC11149696
OpenAlexW4393003952

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.