Evidence map›Paper›PMID 38507502›Full record

ArticleEpigenetics2024

Epigenetic landscape of 5-hydroxymethylcytosine and associations with gene expression in placenta.

Michael Mortillo, Elizabeth G Kennedy, Karen M Hermetz, Amber A Burt, Carmen J Marsit

Open access · diamondAbstract read
In one paragraph

Article in Epigenetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Michael MortilloGangarosa Department of Environmental Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA.ORCID 0000-0002-5917-158X
Elizabeth G KennedyGangarosa Department of Environmental Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA.ORCID 0000-0003-0074-2840
Karen M HermetzGangarosa Department of Environmental Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA.ORCID 0000-0003-1213-9459
Amber A BurtGangarosa Department of Environmental Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA.ORCID 0000-0003-1813-6726
Carmen J MarsitGangarosa Department of Environmental Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA.ORCID 0000-0003-4566-150X
Emory University · US

Funding

Pilot Project ProgramP30ES019776 · NIEHS · EMORY UNIVERSITY · PI Melanie Alice PEARSON · 2013 to 2026
$22.6M
Characterizing the functional genomic atlas of human placenta and unveiling the prenatal programming of early-life developmentR01HD108310 · NICHD · EMORY UNIVERSITY · PI Jia Chen, Carmen Joseph Marsit · 2023 to 2026
$2.8M
Enriching the Rhode Island Child Health StudyR24ES028507 · NIEHS · EMORY UNIVERSITY · PI Carmen Joseph Marsit, LAURA R STROUD · 2017 to 2026
$2.3M
Enriching the Rhode Island Child Health StudyU24ES028507 · NIEHS · EMORY UNIVERSITY · PI MARSIT, CARMEN JOSEPH, STROUD, LAURA R · 2023 to 2025
$1.0M
Environmental influences and function of cytosine modification in human placentaR21ES028226 · NIEHS · EMORY UNIVERSITY · PI MARSIT, CARMEN JOSEPH · 2017 to 2018
$429k
Placental and breastmilk microRNAs in relation to early-life growth and metabolismK99HD104991 · NICHD · EMORY UNIVERSITY · PI GOEHRING, ELIZABETH MARIE KENNEDY · 2021 to 2022
$262k
NICHD NIH HHS K99 HD104991NICHD NIH HHS L40 HD109987NICHD NIH HHS R01 HD108310NIEHS NIH HHS P30 ES019776NIEHS NIH HHS R21 ES028226NIEHS NIH HHS R24 ES028507NIEHS NIH HHS U24 ES028507
6 · The paper itself

Abstract

5-hydroxymethylcystosine (5hmC), is an intermediate product in the DNA demethylation pathway, but may act as a functional epigenetic modification. We have conducted the largest study of site-specific 5hmC in placenta to date using parallel bisulphite and oxidative bisulphite modification with array-based assessment. Incorporating parallel RNA-sequencing data allowed us to assess associations between 5hmC and gene expression, using expression quantitative trait hydroxymethylation (eQTHM) analysis. We identified ~ 47,000 loci with consistently elevated (systematic) 5hmC proportions. Systematic 5hmC was significantly depleted (

Indexed as

DNA MethylationPlacentaSulfites5-MethylcytosineEpigenesis, GeneticFemaleGene ExpressionHumansPregnancy5-hydroxymethylcytosine5-Methylcytosinehydrogen sulfiteSulfiteseQTHMgene expressionHydroxymethylationplacenta

Identifiers

PMID38507502
PMCPMC10956631
OpenAlexW4392983030

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.