Evidence map›Paper›PMID 38507089›Full record

ReviewAntonie van Leeuwenhoek2024

Phylogenomic analysis of the Ponticus clade: strains isolated from the spotted rose snapper (Lutjanus guttatus).

Alejandra de Jesús Chavarín-Meza, Bruno Gómez-Gil, Adrián González-Castillo

Abstract readReview
PubMed Publisher
In one paragraph

Review in Antonie van Leeuwenhoek, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Alejandra de Jesús Chavarín-MezaPrograma Académico de Ingeniería en Biotecnología, Laboratorio de Bioinformática Microbiana, Universidad Politécnica de Sinaloa, Carretera Municipal Libre Km.3 Mazatlán-Higueras, 82199, Mazatlán, Sinaloa, Mexico.
Bruno Gómez-GilCIAD AC, Mazatlán Unit for Aquaculture. MX, Mazatlán, México.
Adrián González-CastilloPrograma Académico de Ingeniería en Biotecnología, Laboratorio de Bioinformática Microbiana, Universidad Politécnica de Sinaloa, Carretera Municipal Libre Km.3 Mazatlán-Higueras, 82199, Mazatlán, Sinaloa, Mexico. agcastillo@upsin.edu.mx.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The family Vibrionaceae is classified into many clades based on their phylogenetic relationships. The Ponticus clade is one of its clades and consists of four species, Vibrio panuliri, V. ponticus, V. rhodolitus, and V. taketomensis. Two strains, CAIM 703 and CAIM 1902, were isolated from the diseased spotted rose snapper external lesion (Lutjanus guttatus), they were analyzed to determine their taxonomic position, a phylogenetic analysis was performed based on the 16S rRNA sequences proved that the two strains are members of the genus Vibrio and they belong to the Ponticus clade. Then, a phylogenomic analysis was performed with four type strains and four reference strains isolated from marine organisms and aquatic environments. Multilocus Sequence Analysis (MLSA) of 139 single-copy genes showed that CAIM 703 and CAIM 1902 belong to V. panuliri. The 16S rRNA sequence similarity value between CAIM 703 and CAIM 1902 was 99.61%. The Ponticus clade species showed Average Nucleotide Identity (ANI) values between 78 to 80% against the two strains for ANIb, except V. panuliri LBS2

Indexed as

VibrioAnimalsAquatic OrganismsDNA, BacterialFishesMultilocus Sequence TypingPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNADNA, BacterialRNA, Ribosomal, 16SGenomic analysisLutjanus guttatusMLSAPonticus cladeVibrio

Identifiers

PMID38507089

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.