Evidence map›Paper›PMID 38507044›Full record

ArticleDatabase : the journal of biological databases and curation2024

Best practices for the manual curation of intrinsically disordered proteins in DisProt.

Federica Quaglia, Anastasia Chasapi, Maria Victoria Nugnes, Maria Cristina Aspromonte, Emanuela Leonardi, Damiano Piovesan, Silvio C E Tosatto

Open access · goldAbstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Federica QuagliaInstitute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council (CNR-IBIOM), Via Giovanni Amendola, 122/O, Bari 70126, Italy.ORCID 0000-0002-0341-4888
Anastasia ChasapiBiological Computation & Process Laboratory, Chemical Process & Energy Resources Institute, Centre for Research & Technology Hellas, 6th km Harilaou - Thermis 57001 Thermi, Thessalonica 57001, Greece.
Maria Victoria NugnesDepartment of Biomedical Sciences, University of Padova, Via Ugo Bassi, 58/B, Padova 35131, Italy.
Maria Cristina AspromonteDepartment of Biomedical Sciences, University of Padova, Via Ugo Bassi, 58/B, Padova 35131, Italy.ORCID 0000-0002-4937-6952
Emanuela LeonardiDepartment of Biomedical Sciences, University of Padova, Via Ugo Bassi, 58/B, Padova 35131, Italy.
Damiano PiovesanDepartment of Biomedical Sciences, University of Padova, Via Ugo Bassi, 58/B, Padova 35131, Italy.ORCID 0000-0001-8210-2390
Silvio C E TosattoDepartment of Biomedical Sciences, University of Padova, Via Ugo Bassi, 58/B, Padova 35131, Italy.ORCID 0000-0003-4525-7793
University of Padua · ITCentre for Research and Technology Hellas · GR

Funding

ELIXIREuropean Union NextGenerationEU, PNRR project - "ELIXIR x NextGenEuropean Union's Horizon 2020 778247 (H2020 Marie Sklodowska Curie Actions RISEItalian Ministry of University and Research (MIUR) NextGenerationEU, PRIN project "PLANS: ProximityPNRR PNRR - CN - G.T.RNA SP. 7 project - National Cente
6 · The paper itself

Abstract

The DisProt database is a resource containing manually curated data on experimentally validated intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs) from the literature. Developed in 2005, its primary goal was to collect structural and functional information into proteins that lack a fixed three-dimensional structure. Today, DisProt has evolved into a major repository that not only collects experimental data but also contributes to our understanding of the IDPs/IDRs roles in various biological processes, such as autophagy or the life cycle mechanisms in viruses or their involvement in diseases (such as cancer and neurodevelopmental disorders). DisProt offers detailed information on the structural states of IDPs/IDRs, including state transitions, interactions and their functions, all provided as curated annotations. One of the central activities of DisProt is the meticulous curation of experimental data from the literature. For this reason, to ensure that every expert and volunteer curator possesses the requisite knowledge for data evaluation, collection and integration, training courses and curation materials are available. However, biocuration guidelines concur on the importance of developing robust guidelines that not only provide critical information about data consistency but also ensure data acquisition.This guideline aims to provide both biocurators and external users with best practices for manually curating IDPs and IDRs in DisProt. It describes every step of the literature curation process and provides use cases of IDP curation within DisProt. Database URL: https://disprot.org/.

Indexed as

Intrinsically Disordered ProteinsDatabases, FactualHumansProtein ConformationIntrinsically Disordered Proteins

Identifiers

PMID38507044
PMCPMC10953794
OpenAlexW4392974270

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.