Evidence map›Paper›PMID 38505828›Full record

ArticleFrontiers in genetics2024

Flexible gold standards for transcription factor regulatory interactions in

Paloma Lara, Socorro Gama-Castro, Heladia Salgado, Claire Rioualen, Víctor H Tierrafría, Luis J Muñiz-Rascado, César Bonavides-Martínez, Julio Collado-Vides

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 3 countries.

Paloma Lara *Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Avenida Universidad S/N, Cuernavaca, Mexico.
Socorro Gama-Castro *Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Avenida Universidad S/N, Cuernavaca, Mexico.
Heladia Salgado *Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Avenida Universidad S/N, Cuernavaca, Mexico.
Claire RioualenCentro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Avenida Universidad S/N, Cuernavaca, Mexico.
Víctor H TierrafríaCentro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Avenida Universidad S/N, Cuernavaca, Mexico.
Luis J Muñiz-RascadoCentro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Avenida Universidad S/N, Cuernavaca, Mexico.
César Bonavides-MartínezCentro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Avenida Universidad S/N, Cuernavaca, Mexico.
Julio Collado-VidesCentro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Avenida Universidad S/N, Cuernavaca, Mexico.
Universidad Nacional Autónoma de México · MXCentre for Genomic Regulation · ES

Funding

The EcoCyc Model Organism Database for Escherichia coli [SRI Proposal ECU 14-631]U24GM077678 · NIGMS · SRI INTERNATIONAL · PI KARP, PETER D · 2006 to 2018
$12.3M
The EcoCyc Model Organism Database for Escherichia coliR01GM077678 · NIGMS · SRI INTERNATIONAL · PI KARP, PETER D · 2019 to 2022
$4.6M
A Comprehensive Resource for Escherichia coli Genomic Data and ToolsR01GM131643 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI COLLADO-VIDES, JULIO · 2019 to 2022
$1.5M
NIGMS NIH HHS R01 GM077678NIGMS NIH HHS R01 GM131643NIGMS NIH HHS U24 GM077678
6 · The paper itself

Abstract

Post-genomic implementations have expanded the experimental strategies to identify elements involved in the regulation of transcription initiation. Here, we present for the first time a detailed analysis of the sources of knowledge supporting the collection of transcriptional regulatory interactions (RIs) of

Indexed as

confidence levelsE. colievidence codeshigh-throughput genomic methodologiesregulatory interactionsRegulonDBsource of knowledge

Identifiers

PMID38505828
PMCPMC10949920
OpenAlexW4392473089

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.