Evidence map›Paper›PMID 38504847›Full record

ArticleOncoimmunology2024

Intratumoral T-cell receptor repertoire composition predicts overall survival in patients with pancreatic ductal adenocarcinoma.

Vikram S Pothuri, Graham D Hogg, Leah Conant, Nicholas Borcherding, C Alston James, Jacqueline Mudd, Greg Williams, Yongwoo David Seo, William G Hawkins, Venu G Pillarisetty and 2 more

Open access · goldAbstract read
In one paragraph

Article in Oncoimmunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Vikram S PothuriDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.ORCID 0000-0003-4725-8706
Graham D HoggDepartment of Medicine, Washington University School of Medicine, St. Louis, MO, USA.ORCID 0000-0002-7143-0695
Leah ConantDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
Nicholas BorcherdingDepartment of Medicine, Washington University School of Medicine, St. Louis, MO, USA.
C Alston JamesDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
Jacqueline MuddDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
Greg WilliamsDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
Yongwoo David SeoDepartment of Surgery, University of Washington School of Medicine, Seattle, WA, USA.
William G HawkinsDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
Venu G PillarisettyDepartment of Surgery, University of Washington School of Medicine, Seattle, WA, USA.
David G DeNardoDepartment of Medicine, Washington University School of Medicine, St. Louis, MO, USA.ORCID 0000-0002-3655-5783
Ryan C FieldsDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.ORCID 0000-0001-6176-8943
Washington University in St. Louis · USThe University of Texas MD Anderson Cancer Center · USUniversity of Washington · US

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI AIMEE S JAMES · 2001 to 2026
$128.0M
Washington University SPORE in Pancreatic CancerP50CA196510 · NCI · WASHINGTON UNIVERSITY · PI HAWKINS, WILLIAM G · 2016 to 2020
$10.9M
Washington University SPORE in Pancreatic CancerP50CA272213 · NCI · WASHINGTON UNIVERSITY · PI David G DeNardo, WILLIAM G HAWKINS · 2023 to 2026
$10.7M
The Impact of Macrophage Origin on the Pathogenesis and Treatment Resistance of Pancreatic CancerR01CA177670 · NCI · WASHINGTON UNIVERSITY · PI DENARDO, DAVID G · 2014 to 2023
$3.3M
Re-wiring PDAC Tumor Immunity Through Dendritic CellsR01CA262506 · NCI · WASHINGTON UNIVERSITY · PI DENARDO, DAVID G, DESELM, CARL · 2021 to 2025
$2.8M
Targeting Focal Adhesion Kinase to Improve RT-inducted Tumor ImmunityR01CA248917 · NCI · WASHINGTON UNIVERSITY · PI DENARDO, DAVID G, KIM, HYUN · 2020 to 2024
$2.5M
The Impact of Metastatic Site On Dendritic Cell-Driven Tumor ImmunityU01CA284086 · NCI · WASHINGTON UNIVERSITY · PI David G DeNardo, Li Ding · 2023 to 2026
$2.3M
Exploiting Integrin Signaling to Overcome Resistance to ImmunotherapyR01CA244938 · NCI · WASHINGTON UNIVERSITY · PI DENARDO, DAVID G, GUPTA, VINEET · 2020 to 2024
$2.2M
Harnessing Dendritic Cells as a Novel Therapy in Pancreatic Ductal AdenocarcinomaF30CA254087 · NCI · WASHINGTON UNIVERSITY · PI HOGG, GRAHAM DOUGLAS · 2020 to 2023
$168k
NCI NIH HHS F30 CA254087NCI NIH HHS P30 CA091842NCI NIH HHS P50 CA196510NCI NIH HHS P50 CA272213NCI NIH HHS R01 CA177670NCI NIH HHS R01 CA244938NCI NIH HHS R01 CA248917NCI NIH HHS R01 CA262506NCI NIH HHS U01 CA284086
6 · The paper itself

Abstract

Pancreatic ductal adenocarcinoma (PDAC) is a lethal malignancy that is refractory to immune checkpoint inhibitor therapy. However, intratumoral T-cell infiltration correlates with improved overall survival (OS). Herein, we characterized the diversity and antigen specificity of the PDAC T-cell receptor (TCR) repertoire to identify novel immune-relevant biomarkers. Demographic, clinical, and TCR-beta sequencing data were collated from 353 patients across three cohorts that underwent surgical resection for PDAC. TCR diversity was calculated using Shannon Wiener index, Inverse Simpson index, and "True entropy." Patients were clustered by shared repertoire specificity. TCRs predictive of OS were identified and their associated transcriptional states were characterized by single-cell RNAseq. In multivariate Cox regression models controlling for relevant covariates, high intratumoral TCR diversity predicted OS across multiple cohorts. Conversely, in peripheral blood, high abundance of T-cells, but not high diversity, predicted OS. Clustering patients based on TCR specificity revealed a subset of TCRs that predicts OS. Interestingly, these TCR sequences were more likely to encode CD8

Indexed as

Carcinoma, Pancreatic DuctalPancreatic NeoplasmsBiomarkersHumansReceptors, Antigen, T-CellT-LymphocytesBiomarkersReceptors, Antigen, T-Cellbiomarkerscancer immunologyimmunotherapyPancreatic cancerT-cell receptor repertoiretumor microenvironment

Identifiers

PMID38504847
PMCPMC10950267
OpenAlexW4392864364

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.