Evidence map›Paper›PMID 38504522›Full record

ArticlePlant communications2024

A predictive model for ethylene-mediated auxin and cytokinin patterning in the Arabidopsis root.

Simon Moore, George Jervis, Jennifer F Topping, Chunli Chen, Junli Liu, Keith Lindsey

Open access · goldAbstract read
In one paragraph

Article in Plant communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
7.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Simon MooreDepartment of Biosciences, Durham University, South Road, Durham DH1 3LE, UK; Hubei Hongshan Laboratory, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
George JervisDepartment of Biosciences, Durham University, South Road, Durham DH1 3LE, UK.
Jennifer F ToppingDepartment of Biosciences, Durham University, South Road, Durham DH1 3LE, UK.
Chunli ChenHubei Hongshan Laboratory, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory for Germplasm Innovation and Utilization for Fruit and Vegetable Horticultural Crops, Huazhong Agricultural University, Wuhan, Hubei 430070, China.
Junli LiuDepartment of Biosciences, Durham University, South Road, Durham DH1 3LE, UK. Electronic address: junli.liu@durham.ac.uk.
Keith LindseyDepartment of Biosciences, Durham University, South Road, Durham DH1 3LE, UK. Electronic address: keith.lindsey@durham.ac.uk.
Durham University · GBHuazhong Agricultural University · CN

Funding

Non-US Government Research Support type
6 · The paper itself

Abstract

The interaction between auxin and cytokinin is important in many aspects of plant development. Experimental measurements of both auxin and cytokinin concentration and reporter gene expression clearly show the coexistence of auxin and cytokinin concentration patterning in Arabidopsis root development. However, in the context of crosstalk among auxin, cytokinin, and ethylene, little is known about how auxin and cytokinin concentration patterns simultaneously emerge and how they regulate each other in the Arabidopsis root. This work utilizes a wide range of experimental observations to propose a mechanism for simultaneous patterning of auxin and cytokinin concentrations. In addition to revealing the regulatory relationships between auxin and cytokinin, this mechanism shows that ethylene signaling is an important factor in achieving simultaneous auxin and cytokinin patterning, while also predicting other experimental observations. Combining the mechanism with a realistic in silico root model reproduces experimental observations of both auxin and cytokinin patterning. Predictions made by the mechanism can be compared with a variety of experimental observations, including those obtained by our group and other independent experiments reported by other groups. Examples of these predictions include patterning of auxin biosynthesis rate, changes in PIN1 and PIN2 patterns in pin3,4,7 mutants, changes in cytokinin patterning in the pls mutant, PLS patterning, and various trends in different mutants. This research reveals a plausible mechanism for simultaneous patterning of auxin and cytokinin concentrations in Arabidopsis root development and suggests a key role for ethylene pattern integration.

Indexed as

ArabidopsisCytokininsEthylenesIndoleacetic AcidsPlant RootsArabidopsis ProteinsGene Expression Regulation, PlantModels, BiologicalArabidopsis ProteinsCytokininsethyleneEthylenesIndoleacetic AcidsArabidopsis rootauxin patterningcytokinin patterningethylene signalingin silico digital rootspatiotemporal modeling

Identifiers

PMID38504522
PMCPMC11287175
OpenAlexW4392947431

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.