Evidence map›Paper›PMID 38504097›Full record

ArticleNature communications2024

Genetic imputation of kidney transcriptome, proteome and multi-omics illuminates new blood pressure and hypertension targets.

Xiaoguang Xu, Chachrit Khunsriraksakul, James M Eales, Sebastien Rubin, David Scannali, Sushant Saluja, David Talavera, Havell Markus, Lida Wang, Maciej Drzal and 29 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
9.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

  1. Urate-lowering effects of losartan: a meta-analysis of randomised controlled trials and target trial emulation.Hypertension research : official journal of the Japanese Society of Hypertension · 2026
    Pooled it
  2. Quantifying direct genetic signal captured by principal component adjustment.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. The genetics of hypertension.Nature reviews. Nephrology · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors at 11 institutions in 6 countries.

Xiaoguang XuDivision of Cardiovascular Sciences, Faculty of Medicine, Biology and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0003-4568-1623
Chachrit KhunsriraksakulDepartment of Public Health Sciences, Penn State College of Medicine, Hershey, PA, USA.ORCID http://orcid.org/0000-0001-5131-1229
James M EalesDivision of Cardiovascular Sciences, Faculty of Medicine, Biology and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0001-6238-5952
Sebastien RubinDivision of Cardiovascular Sciences, Faculty of Medicine, Biology and Health, University of Manchester, Manchester, UK.
David ScannaliDivision of Cardiovascular Sciences, Faculty of Medicine, Biology and Health, University of Manchester, Manchester, UK.
Sushant SalujaDivision of Cardiovascular Sciences, Faculty of Medicine, Biology and Health, University of Manchester, Manchester, UK.
David TalaveraDivision of Cardiovascular Sciences, Faculty of Medicine, Biology and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0002-8820-3931
Havell MarkusDepartment of Public Health Sciences, Penn State College of Medicine, Hershey, PA, USA.
Lida WangDepartment of Public Health Sciences, Penn State College of Medicine, Hershey, PA, USA.ORCID http://orcid.org/0000-0002-7990-7347
Maciej DrzalDivision of Cardiovascular Sciences, Faculty of Medicine, Biology and Health, University of Manchester, Manchester, UK.
Akhlaq MaanDivision of Cardiovascular Sciences, Faculty of Medicine, Biology and Health, University of Manchester, Manchester, UK.
Abigail C LayDivision of Cardiovascular Sciences, Faculty of Medicine, Biology and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0001-5923-634X
Priscilla R PrestesHealth Innovation and Transformation Centre, Federation University Australia, Ballarat, Australia.ORCID http://orcid.org/0000-0002-9034-6595
Jeniece ReganDepartment of Public Health Sciences, Penn State College of Medicine, Hershey, PA, USA.ORCID http://orcid.org/0000-0002-5297-7265
Avantika R DiwadkarDepartment of Public Health Sciences, Penn State College of Medicine, Hershey, PA, USA.
Matthew DenniffDepartment of Cardiovascular Sciences, University of Leicester, Leicester, UK.
Grzegorz RempegaDepartment of Urology, Medical University of Silesia, Katowice, Poland.
Jakub RyszawyDepartment of Urology, Medical University of Silesia, Katowice, Poland.
Robert KrólDepartment of General, Vascular and Transplant Surgery, Faculty of Medical Sciences in Katowice, Medical University of Silesia, Katowice, Poland.
John P DormerDepartment of Cellular Pathology, University Hospitals of Leicester, Leicester, UK.ORCID http://orcid.org/0000-0001-7615-6149
Monika SzulinskaDepartment of Obesity, Metabolic Disorders Treatment and Clinical Dietetics, Karol Marcinkowski University of Medical Sciences, Poznan, Poland.
Marta WalczakDepartment of Internal Diseases, Metabolic Disorders and Arterial Hypertension, Poznan University of Medical Sciences, Poznan, Poland.
Andrzej AntczakDepartment of Urology and Uro-oncology, Karol Marcinkowski University of Medical Sciences, Poznan, Poland.
Pamela R Matías-GarcíaInstitute of Epidemiology, Helmholtz Center Munich, Neuherberg, Germany.
Melanie WaldenbergerInstitute of Epidemiology, Helmholtz Center Munich, Neuherberg, Germany.ORCID http://orcid.org/0000-0003-0583-5093
Adrian S WoolfDivision of Cell Matrix Biology and Regenerative Medicine, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0001-5541-1358
Bernard KeavneyDivision of Cardiovascular Sciences, Faculty of Medicine, Biology and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0001-9573-0812
Ewa Zukowska-SzczechowskaDepartment of Health Care, Silesian Medical College, Katowice, Poland.
Wojciech WystrychowskiDepartment of General, Vascular and Transplant Surgery, Faculty of Medical Sciences in Katowice, Medical University of Silesia, Katowice, Poland.
Joanna ZywiecDepartment of Internal Medicine, Diabetology and Nephrology, Zabrze, Medical University of Silesia, Katowice, Poland.
Pawel BogdanskiDepartment of Obesity, Metabolic Disorders Treatment and Clinical Dietetics, Karol Marcinkowski University of Medical Sciences, Poznan, Poland.
A H Jan DanserDepartment of Internal Medicine, Division of Pharmacology and Vascular Medicine, Erasmus Medical Centre, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0002-5052-3585
Nilesh J SamaniDepartment of Cardiovascular Sciences, University of Leicester, Leicester, UK.
Tomasz J GuzikDepartment of Internal Medicine, Jagiellonian University Medical College, Kraków, Poland.
Andrew P MorrisCentre for Genetics and Genomics Versus Arthritis, Centre for Musculoskeletal Research, Division of Musculoskeletal & Dermatological Sciences, Faculty of Medicine, Biology and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0002-6805-6014
Dajiang J LiuDepartment of Public Health Sciences, Penn State College of Medicine, Hershey, PA, USA.
Fadi J CharcharHealth Innovation and Transformation Centre, Federation University Australia, Ballarat, Australia.ORCID http://orcid.org/0000-0002-6164-9941
Human Kidney Tissue Resource Study Group
Maciej TomaszewskiDivision of Cardiovascular Sciences, Faculty of Medicine, Biology and Health, University of Manchester, Manchester, UK. maciej.tomaszewski@manchester.ac.uk.ORCID http://orcid.org/0000-0001-8215-6567
University of Manchester · GBMedical University of Silesia · PLPennsylvania State University · USManchester Academic Health Science Centre · GBPoznan University of Medical Sciences · PLFederation University · AUHelmholtz Zentrum München · DEUniversity of Leicester · GBErasmus University Rotterdam · NLJagiellonian University · PLUniversity Hospitals of Leicester NHS Trust · GB

Funding

Methods to unveil sex-specific genetic architecture in trans-ancestry meta-analysisR01HG011035 · NHGRI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI Bibo Jiang · 2022 to 2026
$3.8M
Integrative approaches to understand systemic lupus erythematosus etiology in trans-ancestry genetic studiesR01AI174108 · NIAID · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI Laura Carrel, Dajiang Liu · 2022 to 2026
$2.8M
Integrative genomic and geospatial analysis of insurance claim, biobank and GWAS summary statistics for complex traitsR01ES036042 · NIEHS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI Bibo Jiang · 2023 to 2026
$2.1M
Medical Student Training ProgramT32GM118294 · NIGMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI LEVENSON, ROBERT · 2016 to 2021
$1.7M
Penn State Biomedical Big Data to Knowledge (B2D2K) Training ProgramT32LM012415 · NLM · PENNSYLVANIA STATE UNIVERSITY, THE · PI BROACH, JAMES R., HONAVAR, VASANT G. · 2016 to 2020
$1.2M
Integrative genomic and geospatial analysis of insurance claim, biobank and GWAS summary statistics for complex traitsR56HG012358 · NHGRI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI LIU, DAJIANG · 2022 to 2022
$778k
British Heart Foundation (BHF) PG/17/35/33001British Heart Foundation (BHF) PG/19/16/34270British Heart Foundation (BHF) PG/22/10957Medical Research Council MR/Y008340/1NHGRI NIH HHS R01 HG011035NHGRI NIH HHS R56 HG012358NIAID NIH HHS R01 AI174108NIEHS NIH HHS R01 ES036042NIGMS NIH HHS T32 GM118294NLM NIH HHS T32 LM012415Wellcome Trust
6 · The paper itself

Abstract

Genetic mechanisms of blood pressure (BP) regulation remain poorly defined. Using kidney-specific epigenomic annotations and 3D genome information we generated and validated gene expression prediction models for the purpose of transcriptome-wide association studies in 700 human kidneys. We identified 889 kidney genes associated with BP of which 399 were prioritised as contributors to BP regulation. Imputation of kidney proteome and microRNAome uncovered 97 renal proteins and 11 miRNAs associated with BP. Integration with plasma proteomics and metabolomics illuminated circulating levels of myo-inositol, 4-guanidinobutanoate and angiotensinogen as downstream effectors of several kidney BP genes (SLC5A11, AGMAT, AGT, respectively). We showed that genetically determined reduction in renal expression may mimic the effects of rare loss-of-function variants on kidney mRNA/protein and lead to an increase in BP (e.g., ENPEP). We demonstrated a strong correlation (r = 0.81) in expression of protein-coding genes between cells harvested from urine and the kidney highlighting a diagnostic potential of urinary cell transcriptomics. We uncovered adenylyl cyclase activators as a repurposing opportunity for hypertension and illustrated examples of BP-elevating effects of anticancer drugs (e.g. tubulin polymerisation inhibitors). Collectively, our studies provide new biological insights into genetic regulation of BP with potential to drive clinical translation in hypertension.

Indexed as

HypertensionProteomeBlood PressureHumansKidneyMultiomicsSodium-Glucose Transport ProteinsTranscriptomeProteomeSLC5A11 protein, humanSodium-Glucose Transport Proteins

Identifiers

PMID38504097
PMCPMC10950894
OpenAlexW4392955938

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.