Evidence map›Paper›PMID 38503748›Full record

ArticleNature communications2024

Legionella metaeffector MavL reverses ubiquitin ADP-ribosylation via a conserved arginine-specific macrodomain.

Zhengrui Zhang, Jiaqi Fu, Johannes Gregor Matthias Rack, Chuang Li, Jim Voorneveld, Dmitri V Filippov, Ivan Ahel, Zhao-Qing Luo, Chittaranjan Das

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
7.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
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  12. Journal of bacteriology · 2024
    Review
  13. Covalent Probes To CaptureJournal of the American Chemical Society · 2024
    Article
  14. CapturingFrontiers in molecular biosciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Zhengrui ZhangDepartment of Chemistry, Purdue University, West Lafayette, IN, 47907, USA.
Jiaqi FuDepartment of Biological Sciences, Purdue Institute for Inflammation, Immunology and Infectious Disease, Purdue University, West Lafayette, IN, 47907, USA.ORCID http://orcid.org/0000-0003-0081-6133
Johannes Gregor Matthias RackSir William Dunn School of Pathology, University of Oxford, South Parks Road, OX1 3RE, Oxford, UK.ORCID http://orcid.org/0000-0001-8341-6439
Chuang LiDepartment of Biological Sciences, Purdue Institute for Inflammation, Immunology and Infectious Disease, Purdue University, West Lafayette, IN, 47907, USA.
Jim VoorneveldBio-Organic Synthesis, Leiden Institute of Chemistry, Leiden University, 2300 RA, Leiden, The Netherlands.
Dmitri V FilippovBio-Organic Synthesis, Leiden Institute of Chemistry, Leiden University, 2300 RA, Leiden, The Netherlands.ORCID http://orcid.org/0000-0002-6978-7425
Ivan AhelSir William Dunn School of Pathology, University of Oxford, South Parks Road, OX1 3RE, Oxford, UK.ORCID http://orcid.org/0000-0002-9446-3756
Zhao-Qing LuoDepartment of Biological Sciences, Purdue Institute for Inflammation, Immunology and Infectious Disease, Purdue University, West Lafayette, IN, 47907, USA.ORCID http://orcid.org/0000-0001-8890-6621
Chittaranjan DasDepartment of Chemistry, Purdue University, West Lafayette, IN, 47907, USA. cdas@purdue.edu.ORCID http://orcid.org/0000-0002-0567-7753
Purdue University West Lafayette · USLeiden University · NLUniversity of Exeter · GBUniversity of Oxford · GB

Funding

The Biophysics Collaborative Access Team (User Training and Outreach)P30GM138395 · NIGMS · ILLINOIS INSTITUTE OF TECHNOLOGY · PI THOMAS C IRVING · 2021 to 2026
$16.5M
Mechanism of atypical ubiquitination and deubiquitination by bacterial effectorsR01GM126296 · NIGMS · PURDUE UNIVERSITY · PI Chittaranjan Das · 2018 to 2026
$3.6M
Effector-mediated Ubiquitin Manipulation in Legionella Pneumophila PathogenesisR01AI127465 · NIAID · PURDUE UNIVERSITY · PI Qing Deng · 2017 to 2026
$3.4M
Drug Discovery in Infectious Disease TrainingT32AI148103 · NIAID · PURDUE UNIVERSITY · PI STAHELIN, ROBERT VIRGIL, YEO, YOON · 2020 to 2024
$949k
DeADP-ribosylation of host targets mediated by a bacterial effectorR21AI171709 · NIAID · PURDUE UNIVERSITY · PI DAS, CHITTARANJAN · 2023 to 2024
$426k
Cancer Research UK 22284Medical Research Council MR/N006364/2Medical Research Council MR/V033417/1Medical Research Council MR/X007472/1NIAID NIH HHS R01 AI127465NIAID NIH HHS R21 AI171709NIAID NIH HHS T32 AI148103NIGMS NIH HHS P30 GM138395NIGMS NIH HHS R01 GM126296Wellcome Trust
6 · The paper itself

Abstract

ADP-ribosylation is a reversible post-translational modification involved in various cellular activities. Removal of ADP-ribosylation requires (ADP-ribosyl)hydrolases, with macrodomain enzymes being a major family in this category. The pathogen Legionella pneumophila mediates atypical ubiquitination of host targets using the SidE effector family in a process that involves ubiquitin ADP-ribosylation on arginine 42 as an obligatory step. Here, we show that the Legionella macrodomain effector MavL regulates this pathway by reversing the arginine ADP-ribosylation, likely to minimize potential detrimental effects caused by the modified ubiquitin. We determine the crystal structure of ADP-ribose-bound MavL, providing structural insights into recognition of the ADP-ribosyl group and catalytic mechanism of its removal. Further analyses reveal DUF4804 as a class of MavL-like macrodomain enzymes whose representative members show unique selectivity for mono-ADP-ribosylated arginine residue in synthetic substrates. We find such enzymes are also present in eukaryotes, as exemplified by two previously uncharacterized (ADP-ribosyl)hydrolases in Drosophila melanogaster. Crystal structures of several proteins in this class provide insights into arginine specificity and a shared mode of ADP-ribose interaction distinct from previously characterized macrodomains. Collectively, our study reveals a new regulatory layer of SidE-catalyzed ubiquitination and expands the current understanding of macrodomain enzymes.

Indexed as

LegionellaUbiquitinAdenosine Diphosphate RiboseADP-RibosylationAnimalsDrosophila melanogasterHydrolasesAdenosine Diphosphate RiboseHydrolasesUbiquitin

Identifiers

PMID38503748
PMCPMC10951314
OpenAlexW4392954885

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.