Evidence map›Paper›PMID 38503286›Full record

ArticleMolecular cell2024

A kinetic dichotomy between mitochondrial and nuclear gene expression processes.

Erik McShane, Mary Couvillion, Robert Ietswaart, Gyan Prakash, Brendan M Smalec, Iliana Soto, Autum R Baxter-Koenigs, Karine Choquet, L Stirling Churchman

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
11.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Review
  6. TDP-43: [GU]-ardian of the transcriptome.Molecular neurodegeneration · 2026
    Review
  7. Review
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  10. Human lncRNAProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  11. Cooperative Architecture of Mitochondrial Proteome Homeostasis.medRxiv : the preprint server for health sciences · 2026
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Nanomaterial-induced mitochondrial biogenesis enhances intercellular mitochondrial transfer efficiency.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Erik McShaneDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA.
Mary CouvillionDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA.
Robert IetswaartDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA.
Gyan PrakashDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA.
Brendan M SmalecDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA.
Iliana SotoDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA.
Autum R Baxter-KoenigsDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA.
Karine ChoquetDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA.
L Stirling ChurchmanDepartment of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA. Electronic address: churchman@genetics.med.harvard.edu.
Harvard University · US

Funding

TRAINING GRANT IN GENETICST32GM007748 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Anne O'Donnell-Luria, Louise Wilkins-Haug · 1985 to 2026
$12.0M
Mechanisms of Transcriptional Control Revealed by Nascent Transcript SequencingR01HG007173 · NHGRI · HARVARD MEDICAL SCHOOL · PI Lee Stirling Churchman · 2013 to 2026
$6.7M
Nuclear-mitochondrial co-regulation during mitochondrial biogenesisR01GM123002 · NIGMS · HARVARD MEDICAL SCHOOL · PI CHURCHMAN, LEE STIRLING · 2017 to 2020
$1.3M
NHGRI NIH HHS R01 HG007173NIGMS NIH HHS R01 GM123002NIGMS NIH HHS T32 GM007748
6 · The paper itself

Abstract

Oxidative phosphorylation (OXPHOS) complexes, encoded by both mitochondrial and nuclear DNA, are essential producers of cellular ATP, but how nuclear and mitochondrial gene expression steps are coordinated to achieve balanced OXPHOS subunit biogenesis remains unresolved. Here, we present a parallel quantitative analysis of the human nuclear and mitochondrial messenger RNA (mt-mRNA) life cycles, including transcript production, processing, ribosome association, and degradation. The kinetic rates of nearly every stage of gene expression differed starkly across compartments. Compared with nuclear mRNAs, mt-mRNAs were produced 1,100-fold more, degraded 7-fold faster, and accumulated to 160-fold higher levels. Quantitative modeling and depletion of mitochondrial factors LRPPRC and FASTKD5 identified critical points of mitochondrial regulatory control, revealing that the mitonuclear expression disparities intrinsically arise from the highly polycistronic nature of human mitochondrial pre-mRNA. We propose that resolving these differences requires a 100-fold slower mitochondrial translation rate, illuminating the mitoribosome as a nexus of mitonuclear co-regulation.

Indexed as

MitochondriaMitochondrial RibosomesDNA, MitochondrialHumansMitochondrial ProteinsOxidative PhosphorylationProtein BiosynthesisDNA, MitochondrialMitochondrial Proteinsgene regulationgenetic conflictLeighs diseaseLRPPRCmetabolic regulationmitochondrial gene expressionmitochondrial translationmitonuclear balanceorganellular biogenesisoxidative phosphorylationRNA life cycle

Identifiers

PMID38503286
PMCPMC11236289
OpenAlexW4392910874

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.