Evidence map›Paper›PMID 38502405›Full record

ArticleJournal of fluorescence2025

GFP Transfection Alters Protein Expression Patterns in Prostate Cancer Cells: A Proteomic Study.

Sevinc Yanar, Mehmet Sarihan, Murat Kasap, Gurler Akpinar, Kerem Teke, Busra Yaprak Bayrak

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of fluorescence, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Dual-line Genome-scale CRISPR Screening Enables Robust Target Gene Discovery.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Sevinc YanarFaculty of Medicine, Department of Medical Biology, Kocaeli University, Kocaeli, Turkey. sevincsecer@gmail.com.ORCID http://orcid.org/0000-0002-6438-7385
Mehmet SarihanFaculty of Medicine, Department of Medical Biology, Kocaeli University, Kocaeli, Turkey.ORCID http://orcid.org/0000-0002-1565-5718
Murat KasapFaculty of Medicine, Department of Medical Biology, Kocaeli University, Kocaeli, Turkey.ORCID http://orcid.org/0000-0001-8527-2096
Gurler AkpinarFaculty of Medicine, Department of Medical Biology, Kocaeli University, Kocaeli, Turkey.ORCID http://orcid.org/0000-0002-9675-3714
Kerem TekeFaculty of Medicine, Department of Urology, Kocaeli University, Kocaeli, Turkey.ORCID http://orcid.org/0000-0001-9030-4662
Busra Yaprak BayrakFaculty of Medicine, Department of Pathology, Kocaeli University, Kocaeli, Turkey.ORCID http://orcid.org/0000-0002-0537-3127
Kocaeli Üniversitesi · TRSakarya University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeGreen Fluorescent Protein is widely used as a cellular marker tool, but its potential influence on cells has been questioned. Although the potential off-target effects of GFP on tumor cells have been studied to some extent, the findings at the molecular level are insufficient to explain the effect of GFP expression on the tumorigenic capacity of cancer cells. Here, we aimed to investigate the effect of GFP expression on the tumorigenicity of PC3 prostate cancer cells.

methodsUsing GFP-expressing and wild-type PC-3 cells, xenograft models were generated in athymic BALB/C mice. To identify differentially expressed proteins, the change in cells proteome was investigated by label-free quantification with nano-high performance liquid chromatography to tandem mass spectrometry (nHPLC-MS/MS). Proteins that showed significantly altered expression levels were evaluated using the bioinformatics tools.

resultsUnlike the wild-type PC-3 cells, GFP-expressing cells failed to develop tumor. Comparative proteome analysis of GFP-expressing cells with WT PC-3 cells revealed a total of 216 differentially regulated proteins, of which 98 were upregulated and 117 were downregulated.

conclusionUpon GFP expression, differential changes in several pathways including the immune system, translational machinery, energy metabolism, elements of cytoskeletal and VEGF signaling pathway were observed. Therefore, care should be taken into account to prevent reporting deceitful mechanisms generated from studies utilizing GFP.

Indexed as

Gene Expression Regulation, NeoplasticGreen Fluorescent ProteinsProstatic NeoplasmsProteomeProteomicsTransfectionAnimalsCell Line, TumorHumansMaleMiceMice, Inbred BALB CMice, NudePC-3 CellsGreen Fluorescent ProteinsProteomeGreen Fluorescent ProteinProstate cancerProteomicsTumorigenicityXenograft Model

Identifiers

PMID38502405
OpenAlexW4392964280

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.