Evidence map›Paper›PMID 38501072›Full record

ArticleMayo Clinic proceedings. Digital health2024

Thyroid Ultrasound Appropriateness Identification Through Natural Language Processing of Electronic Health Records.

Cristian Soto Jacome, Danny Segura Torres, Jungwei W Fan, Ricardo Loor-Torres, Mayra Duran, Misk Al Zahidy, Esteban Cabezas, Mariana Borras-Osorio, David Toro-Tobon, Yuqi Wu and 3 more

Abstract read
In one paragraph

Article in Mayo Clinic proceedings. Digital health, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Use of Natural Language Processing to Extract and Classify Papillary Thyroid Cancer Features From Surgical Pathology Reports.Endocrine practice : official journal of the American College of Endocrinology and the American Association of Clinical Endocrinologists · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Cristian Soto JacomeDivision of Endocrinology, Diabetes, Metabolism, and Nutrition, Department of Medicine, Knowledge and Evaluation Research Unit, Mayo Clinic, Rochester, MN.
Danny Segura TorresDivision of Endocrinology, Diabetes, Metabolism, and Nutrition, Department of Medicine, Knowledge and Evaluation Research Unit, Mayo Clinic, Rochester, MN.
Jungwei W FanDepartment of Artificial, Intelligence and Informatics, Mayo Clinic, Rochester, MN.
Ricardo Loor-TorresDivision of Endocrinology, Diabetes, Metabolism, and Nutrition, Department of Medicine, Knowledge and Evaluation Research Unit, Mayo Clinic, Rochester, MN.
Mayra DuranDivision of Endocrinology, Diabetes, Metabolism, and Nutrition, Department of Medicine, Knowledge and Evaluation Research Unit, Mayo Clinic, Rochester, MN.
Misk Al ZahidyDivision of Endocrinology, Diabetes, Metabolism, and Nutrition, Department of Medicine, Knowledge and Evaluation Research Unit, Mayo Clinic, Rochester, MN.
Esteban CabezasDivision of Endocrinology, Diabetes, Metabolism, and Nutrition, Department of Medicine, Knowledge and Evaluation Research Unit, Mayo Clinic, Rochester, MN.
Mariana Borras-OsorioDivision of Endocrinology, Diabetes, Metabolism, and Nutrition, Department of Medicine, Knowledge and Evaluation Research Unit, Mayo Clinic, Rochester, MN.
David Toro-TobonDivision of Endocrinology, Diabetes, Metabolism, and Nutrition, Mayo Clinic, Rochester, MN.
Yuqi WuDepartment of Artificial, Intelligence and Informatics, Mayo Clinic, Rochester, MN.
Yonghui WuDepartment of Health Outcomes & Biomedical Informatics, University of Florida, Gainesville, FL.
Naykky Singh OspinaDivision of Endocrinology, Department of Medicine, University of Florida, Gainesville, FL.
Juan P BritoDivision of Endocrinology, Diabetes, Metabolism, and Nutrition, Department of Medicine, Knowledge and Evaluation Research Unit, Mayo Clinic, Rochester, MN.

Funding

De-implementation of inappropriate thyroid ultrasoundR37CA272473 · NCI · MAYO CLINIC ROCHESTER · PI Juan P Brito Campana · 2022 to 2026
$2.6M
Advancing Drug Repositioning for Alzheimer’s Disease using Real-world DataR56AG069880 · NIA · UNIVERSITY OF FLORIDA · PI BIAN, JIANG, CHEN, YONG · 2021 to 2022
$1.6M
Adequate selection of patients for thyroid biopsy: evaluation of a shared decision making conversation aidK08CA248972 · NCI · UNIVERSITY OF FLORIDA · PI SINGH OSPINA, NAYKKY · 2020 to 2024
$1.1M
NCI NIH HHS K08 CA248972NCI NIH HHS R37 CA272473NIA NIH HHS R56 AG069880
6 · The paper itself

Abstract

Objective: To address thyroid cancer overdiagnosis, we aim to develop a natural language processing (NLP) algorithm to determine the appropriateness of thyroid ultrasounds (TUS). Patients and Methods: Between 2017 and 2021, we identified 18,000 TUS patients at Mayo Clinic and selected 628 for chart review to create a ground truth dataset based on consensus. We developed a rule-based NLP pipeline to identify TUS as appropriate TUS (aTUS) or inappropriate TUS (iTUS) using patients' clinical notes and additional meta information. In addition, we designed an abbreviated NLP pipeline (aNLP) solely focusing on labels from TUS order requisitions to facilitate deployment at other health care systems. Our dataset was split into a training set of 468 (75%) and a test set of 160 (25%), using the former for rule development and the latter for performance evaluation. Results: There were 449 (95.9%) patients identified as aTUS and 19 (4.06%) as iTUS in the training set; there are 155 (96.88%) patients identified as aTUS and 5 (3.12%) were iTUS in the test set. In the training set, the pipeline achieved a sensitivity of 0.99, specificity of 0.95, and positive predictive value of 1.0 for detecting aTUS. The testing cohort revealed a sensitivity of 0.96, specificity of 0.80, and positive predictive value of 0.99. Similar performance metrics were observed in the aNLP pipeline. Conclusion: The NLP models can accurately identify the appropriateness of a thyroid ultrasound from clinical documentation and order requisition information, a critical initial step toward evaluating the drivers and outcomes of TUS use and subsequent thyroid cancer overdiagnosis.

Identifiers

PMID38501072
PMCPMC10947349

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.