Evidence map›Paper›PMID 38501034›Full record

ArticleComputational intelligence and neuroscience2022

An Intelligent Classification System for Cancer Detection Based on DNA Methylation Using ML and Semantic Knowledge in Healthcare.

Anuradha Thakare, Manisha Bhende, Mulugeta Tesema, Mohammed Dighriri, R Bhavani, Amena Mahmoud

RetractedOpen access · hybridAbstract readRetracted Publication
In one paragraph

Article in Computational intelligence and neuroscience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Anuradha ThakareDepartment of Computer Engineering, Pimpri Chinchwad College of Engineering, Pune, India.ORCID https://orcid.org/0000-0001-6281-8711
Manisha BhendeMarathwada Mitra Mandal's Institute of Technology, Pune, India.ORCID https://orcid.org/0000-0003-2407-8091
Mulugeta TesemaDepartment of Chemistry (Analytical), College of Natural and Computational Sciences, Dambi Dollo University, Dambi Dollo, Oromia Region, Ethiopia.ORCID https://orcid.org/0000-0002-7569-7856
Mohammed DighririDepartment of Basic Sciences and General Requirements -IT skills, Fakeeh College for Medical Sciences (FCMS), Jeddah, Saudi Arabia.ORCID https://orcid.org/0000-0002-2160-4511
R BhavaniDepartment of CSE, Saveetha School of Engineering, Saveetha Institute of Medical and Technical Sciences, Chennai 602105, India.ORCID https://orcid.org/0000-0002-6511-9622
Amena MahmoudComputer Science Department, Faculty of Computers and Information, Kafrelsheikh University, Kafr El Sheikh, Egypt.ORCID https://orcid.org/0000-0001-5415-2972
Dambi Dollo UniversityKafrelsheikh University · EGSaveetha University · INSoliman Fakeeh Hospital · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To consistently assess a patient's internal and external wellness and diagnose chronic conditions like cancer, Alzheimer's disease, and cardiovascular disease, wearable sensing devices are being used. Wearable technologies and networking websites have become incredibly common in the medical sector in recent times. The condition of a patient's health can be influenced by a number of factors, including psychological response, emotional stability, and anxiety levels, which can be evaluated using social network analysis based on graph theory-based techniques and these ideas, known as "social network analysis" (SNA) are used to study relationship phenomena. Therefore, numerous uses for SNA in health research are possible, ranging from social science to exact science. For example, it can be used to research cooperative networks of healthcare providers and hazard-prone behaviors, infectious disease transmission, and the spread of initiatives for health promotion and prevention. Recently, a number of machine learning-based healthcare solutions have been proposed to track chronic illnesses utilizing data from social networks and wearable monitoring devices. In our suggested approach, we are using an intelligent system with the assistance of wearable sensors for the classification of cancer based on DNA methylation, an important epigenetic process in the human genome that controls gene expression and has been connected to a number of health issues. A mixed-sampling imbalanced data ensemble classification technique is created with the help of biomedical sensors to address the problem of class imbalance and high dimensionality in the Cancer Genome Atlas (TCGA) massive data. This technique is based on the Intelligent Synthetic Minority Oversampling (SMOTE) algorithm. The false-negative rate significantly rises as a result of this, to give a larger data set, a new minority class sample will be first obtained. The noise created during the sample expansion process is actually any data that has been acquired, preserved, or altered in a way that prevents the system that initially conceived it from accessing or utilizing it. Noisy data boosts the amount of space needed excessively and can also drastically influence the findings of any data collection investigation and therefore can also affect the sample sets of one or the other class, resulting in the class imbalance which acts as a common problem in ML datasets. The Tomek Link method is then used to eliminate this noise, producing a reasonably balanced data set. Each layer selects two random forest structures using the cascading forest structure of the deep forest (GC-Forest) algorithm to increase the generalization ability of the model and create the final classification model. Experiments using DNA methylation data collected by employing biosensors from six tumor patients reveal that the mixed-sampling unbalanced data ensemble classification technique may increase the sensitivity to the minority class while maintaining the majority class's classification accuracy.

Identifiers

PMID38501034
PMCPMC10948228
OpenAlexW4304127807

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.