Evidence map›Paper›PMID 38499920›Full record

ArticleActa parasitologica2024

Development of New PCR Protocols to Detect Genetic Diversity in the Metronidazole Metabolism Genes in Susceptible and Refractory Clinical Samples of Giardia duodenalis.

Ali Asghari, Farzad Mahdavi, Amirhosein Yousefi, Laya Shamsi, Roya Badali, Mohammad Reza Mohammadi, Hamid Irannejad, Behnam Mohammadi-Ghalehbin, Saeed Shahabi, Qasem Asgari and 2 more

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In one paragraph

Article in Acta parasitologica, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 8 institutions in 2 countries.

Ali Asghari *Department of Parasitology and Mycology, School of Medicine, Shiraz University of Medical Sciences, Shiraz, Iran.ORCID http://orcid.org/0000-0002-4005-2687
Farzad Mahdavi *Department of Medical Parasitology and Mycology, School of Medicine, Guilan University of Medical Sciences, Rasht, Gilan, Iran.
Amirhosein YousefiDepartment of Pharmaceutical Biotechnology, University of Pavia, Pavia, Italy.
Laya ShamsiDepartment of Pathobiology, Faculty of Veterinary Medicine, Urmia University, Urmia, Iran.
Roya BadaliDepartment of Pharmaceutical Biotechnology, University of Pavia, Pavia, Italy.
Mohammad Reza MohammadiDepartment of Bacteriology, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran.
Hamid IrannejadDepartment of Medicinal Chemistry, Faculty of Pharmacy, Mazandaran University of Medical Sciences, Sari, Iran.
Behnam Mohammadi-GhalehbinZoonoses Research Center, Ardabil University of Medical Sciences, Ardabil, Iran.
Saeed ShahabiDepartment of Biology and Control of Disease Vectors, School of Health, Shiraz University of Medical Sciences, Shiraz, Iran.
Qasem AsgariDepartment of Parasitology and Mycology, School of Medicine, Shiraz University of Medical Sciences, Shiraz, Iran.
Mohammad Hossein MotazedianNanomedicine and Nanobiology Research Center, Shiraz University of Medical Sciences, Shiraz, Iran. motazedm@sums.ac.ir.
Saiyad BastaminejadDepartment of Genetics and Molecular Medicine, School of ParaMedicine, Ilam University of Medical Sciences, Ilam, Iran. s.bastaminejad@gmail.com.
Shiraz University of Medical Sciences · IRUniversity of Pavia · ITArdabil University of Medical Sciences · IRGuilan University of Medical Sciences · IRMazandaran University of Medical Sciences · IRMedical University of Ilam · IRTarbiat Modares University · IRUrmia University · IR

Funding

Shiraz University of Medical Sciences 21882
6 · The paper itself

Abstract

purposeInvestigating the genetic variation in thioredoxin reductase (TrxR) and nitroreductase (NR) genes in both treatment-resistant and -sensitive Giardia duodenalis isolates can provide valuable information in identifying potential markers of resistance to metronidazole. The rapid increase in metronidazole treatment failures suggests the presence of genetic resistance mechanisms. By analyzing these genes, researchers can gain insights into the efficacy of metronidazole against G. duodenalis and potentially develop alternative treatment strategies. In this regard, four G. duodenalis isolates (two clinically sensitive and two clinically resistant to metronidazole) were collected from various hospitals of Shiraz, southwestern Iran.

methodsParasitological methods including sucrose flotation and microscopy were employed for the primary confirmation of G. duodenalis cysts in stool samples. Microscopy-positive samples were approved by SSU-PCR amplification of the parasite DNA. All four positive G. duodenalis specimens at SSU-PCR were afterward analyzed utilizing designed primers based on important metronidazole metabolism genes including TrxR, NR1, and NR2.

resultsUnlike TrxR gene, the results of NR1 and NR2 genes showed that there are non-synonymous variations between sequences of treatment-sensitive and -resistant samples compared to reference sequences. Furthermore, the outcomes of molecular docking revealed that there is an interaction between the protein sequence and spatial shape of treatment-resistant samples and metronidazole in the position of serine amino acid based on the NR1 gene.

conclusionThis issue can be one of the possible factors involved in the resistance of Giardia parasites to metronidazole. To reach more accurate results, a large sample size along with simulation and advanced molecular dynamics investigations are needed.

Indexed as

Antiprotozoal AgentsDrug ResistanceGenetic VariationGiardia lambliaGiardiasisMetronidazoleNitroreductasesPolymerase Chain ReactionDNA, ProtozoanFecesHumansIranMolecular Docking SimulationProtozoan ProteinsThioredoxin-Disulfide ReductaseAntiprotozoal AgentsDNA, ProtozoanMetronidazoleNitroreductasesProtozoan ProteinsThioredoxin-Disulfide ReductaseDrug resistanceGenetic diversityGiardia duodenalisIranMetronidazole

Identifiers

PMID38499920
OpenAlexW4392900832

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.