Evidence map›Paper›PMID 38499810›Full record

ArticleEMBO reports2024

New plastids, old proteins: repeated endosymbiotic acquisitions in kareniacean dinoflagellates.

Anna Mg Novák Vanclová, Charlotte Nef, Zoltán Füssy, Adél Vancl, Fuhai Liu, Chris Bowler, Richard G Dorrell

Open access · diamondAbstract read
In one paragraph

Article in EMBO reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Euglenid Extrachromosomal DNA: Assembly and Annotation.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 4 countries.

Anna Mg Novák VanclováInstitut de Biologie de l'École Normale Supérieure (IBENS), École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France. anna.novak-vanclova@ijm.fr.ORCID 0000-0002-1613-1625
Charlotte NefInstitut de Biologie de l'École Normale Supérieure (IBENS), École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France.ORCID 0000-0002-9446-6367
Zoltán FüssyFaculty of Science, Charles University, BIOCEV, Vestec, Czechia.ORCID 0000-0002-0820-6359
Adél VanclFaculty of Mathematics and Physics, Charles University, Prague, Czechia.
Fuhai LiuInstitut de Biologie de l'École Normale Supérieure (IBENS), École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France.
Chris BowlerInstitut de Biologie de l'École Normale Supérieure (IBENS), École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France.ORCID 0000-0003-3835-6187
Richard G DorrellInstitut de Biologie de l'École Normale Supérieure (IBENS), École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France. richard.dorrell@sorbonne-universite.fr.ORCID 0000-0001-6263-9115
Centre National de la Recherche Scientifique · FRCharles University · CZ

Funding

Agence Nationale de la Recherche (ANR) ANR-10-LABX-54Agence Nationale de la Recherche (ANR) ANR-19-CE20-0020Agence Nationale de la Recherche (ANR) ANR-20-CE13-0007Agence Nationale de la Recherche (ANR) ANR-21-CE02-0014Centre National de la Recherche Scientifique (CNRS) Momentum Fellowship 2019-2021EC | ERC | HORIZON EUROPE European Research Council (ERC) 835067EC | European Research Council (ERC) 101039760EC | European Research Council (ERC) 835067e-INFRA CZ 90254Université de Recherche Paris Sciences et Lettres (PSL) ANR-1253 11-IDEX-0001-02
6 · The paper itself

Abstract

Dinoflagellates are a diverse group of ecologically significant micro-eukaryotes that can serve as a model system for plastid symbiogenesis due to their susceptibility to plastid loss and replacement via serial endosymbiosis. Kareniaceae harbor fucoxanthin-pigmented plastids instead of the ancestral peridinin-pigmented ones and support them with a diverse range of nucleus-encoded plastid-targeted proteins originating from the haptophyte endosymbiont, dinoflagellate host, and/or lateral gene transfers (LGT). Here, we present predicted plastid proteomes from seven distantly related kareniaceans in three genera (Karenia, Karlodinium, and Takayama) and analyze their evolutionary patterns using automated tree building and sorting. We project a relatively limited ( ~ 10%) haptophyte signal pointing towards a shared origin in the family Chrysochromulinaceae. Our data establish significant variations in the functional distributions of these signals, emphasizing the importance of micro-evolutionary processes in shaping the chimeric proteomes. Analysis of plastid genome sequences recontextualizes these results by a striking finding the extant kareniacean plastids are in fact not all of the same origin, as two of the studied species (Karlodinium armiger, Takayama helix) possess plastids from different haptophyte orders than the rest.

Indexed as

DinoflagellidaPhylogenyPlastidsProteomeSymbiosisProteomeAutomated Tree SortingMyzozoaPost-Endosymbiotic Organelle EvolutionProtistsShopping Bag Model

Identifiers

PMID38499810
PMCPMC11014865
OpenAlexW4392913698

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.