Evidence map›Paper›PMID 38499490›Full record

ArticleNucleic acids research2024

Biochemical characterization of the meiosis-essential yet evolutionarily divergent topoisomerase VIB-like protein MTOPVIB from Arabidopsis thaliana.

Hsin-Wen Chen, Hsin-Yi Yeh, Chih-Chiang Chang, Wei-Chen Kuo, Sheng-Wei Lin, Nathalie Vrielynck, Mathilde Grelon, Nei-Li Chan, Peter Chi

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Hsin-Wen ChenInstitute of Biochemical Sciences, National Taiwan University, 10617 Taipei, Taiwan.
Hsin-Yi YehInstitute of Biochemical Sciences, National Taiwan University, 10617 Taipei, Taiwan.
Chih-Chiang ChangInstitute of Biochemistry and Molecular Biology, College of Medicine, National Taiwan University, 100233 Taipei, Taiwan.
Wei-Chen KuoInstitute of Biochemistry and Molecular Biology, College of Medicine, National Taiwan University, 100233 Taipei, Taiwan.
Sheng-Wei LinInstitute of Biological Chemistry, Academia Sinica, 11529 Taipei, Taiwan.
Nathalie VrielynckUniversité Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), 78000,Versailles, France.
Mathilde GrelonUniversité Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), 78000,Versailles, France.ORCID 0000-0003-3695-4984
Nei-Li ChanInstitute of Biochemistry and Molecular Biology, College of Medicine, National Taiwan University, 100233 Taipei, Taiwan.ORCID 0000-0003-0139-6513
Peter ChiInstitute of Biochemical Sciences, National Taiwan University, 10617 Taipei, Taiwan.ORCID 0000-0001-9229-8729
National Taiwan University · TWAgroParisTech · FRInstitute of Biological Chemistry, Academia Sinica · TW

Funding

Academia SinicaAgence Nationale de la Recherche ANR ESSPOIR-17-CE12-0032National Science and Technology Council MOST-107-2923-B-002-001-MY4National Taiwan University NTU-112L891605Saclay Plant Sciences-SPS ANR-17-EUR-0007
6 · The paper itself

Abstract

Formation of programmed DNA double-strand breaks is essential for initiating meiotic recombination. Genetic studies on Arabidopsis thaliana and Mus musculus have revealed that assembly of a type IIB topoisomerase VI (Topo VI)-like complex, composed of SPO11 and MTOPVIB, is a prerequisite for generating DNA breaks. However, it remains enigmatic if MTOPVIB resembles its Topo VI subunit B (VIB) ortholog in possessing robust ATPase activity, ability to undergo ATP-dependent dimerization, and activation of SPO11-mediated DNA cleavage. Here, we successfully prepared highly pure A. thaliana MTOPVIB and MTOPVIB-SPO11 complex. Contrary to expectations, our findings highlight that MTOPVIB differs from orthologous Topo VIB by lacking ATP-binding activity and independently forming dimers without ATP. Most significantly, our study reveals that while MTOPVIB lacks the capability to stimulate SPO11-mediated DNA cleavage, it functions as a bona fide DNA-binding protein and plays a substantial role in facilitating the dsDNA binding capacity of the MOTOVIB-SPO11 complex. Thus, we illustrate mechanistic divergence between the MTOPVIB-SPO11 complex and classical type IIB topoisomerases.

Indexed as

ArabidopsisArabidopsis ProteinsDNA Topoisomerases, Type IIAdenosine TriphosphateArchaeal ProteinsDNA-Binding ProteinsDNA Breaks, Double-StrandedDNA TopoisomerasesEndodeoxyribonucleasesEvolution, MolecularMeiosisMeiotic Recombination Protein SPO11Protein MultimerizationAdenosine TriphosphateArabidopsis ProteinsArchaeal ProteinsDNA-Binding ProteinsDNA TopoisomerasesDNA Topoisomerases, Type IIDNA topoisomerase VIEndodeoxyribonucleasesMeiotic Recombination Protein SPO11

Identifiers

PMID38499490
PMCPMC11077084
OpenAlexW4392968896

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.