Evidence map›Paper›PMID 38498588›Full record

ArticlePloS one2024

Multifunction fluorescence open source in vivo/in vitro imaging system (openIVIS).

John M Branning, Kealy A Faughnan, Austin A Tomson, Grant J Bell, Sydney M Isbell, Allen DeGroot, Lydia Jameson, Kramer Kilroy, Michael Smith, Robert Smith and 9 more

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

John M BranningQuantitative Biosciences and Engineering, Colorado School of Mines, Golden, Colorado, United States of America.
Kealy A FaughnanChemical and Biological Engineering Department, Colorado School of Mines, Golden, Colorado, United States of America.
Austin A TomsonMechanical Engineering, Colorado School of Mines, Golden, Colorado, United States of America.
Grant J BellQuantitative Biosciences and Engineering, Colorado School of Mines, Golden, Colorado, United States of America.ORCID 0000-0002-9296-2332
Sydney M IsbellChemical and Biological Engineering Department, Colorado School of Mines, Golden, Colorado, United States of America.
Allen DeGrootElectrical Engineering, Colorado School of Mines, Golden, Colorado, United States of America.
Lydia JamesonElectrical Engineering, Colorado School of Mines, Golden, Colorado, United States of America.
Kramer KilroyMechanical Engineering, Colorado School of Mines, Golden, Colorado, United States of America.
Michael SmithMechanical Engineering, Colorado School of Mines, Golden, Colorado, United States of America.
Robert SmithElectrical Engineering, Colorado School of Mines, Golden, Colorado, United States of America.
Landon MottelArvada West High School, Arvada, Colorado, United States of America.
Elizabeth G BranningColorado Early Colleges Castle Rock, Castle Rock, Colorado, United States of America.
Zoe WorrallDepartment of Engineering, Harvey Mudd College, Claremont, California, United States of America.
Frances AndersonDepartment of Engineering, Harvey Mudd College, Claremont, California, United States of America.
Ashrit PanditaradyulaDepartment of Engineering, Harvey Mudd College, Claremont, California, United States of America.
William YangDepartment of Engineering, Harvey Mudd College, Claremont, California, United States of America.
Joseph AbdelmalekDepartment of Engineering, Harvey Mudd College, Claremont, California, United States of America.
Joshua BrakeDepartment of Engineering, Harvey Mudd College, Claremont, California, United States of America.
Kevin J CashQuantitative Biosciences and Engineering, Colorado School of Mines, Golden, Colorado, United States of America.ORCID 0000-0002-9748-2530

Funding

Nanosensors to study invertebrate functional hypoxia and electrolyte regulationR15GM140443 · NIGMS · COLORADO SCHOOL OF MINES · PI CASH, KEVIN JOSEPH · 2020 to 2020
$419k
NIGMS NIH HHS R15 GM140443
6 · The paper itself

Abstract

The widespread availability and diversity of open-source microcontrollers paired with off-the-shelf electronics and 3D printed technology has led to the creation of a wide range of low-cost scientific instruments, including microscopes, spectrometers, sensors, data loggers, and other tools that can be used for research, education, and experimentation. These devices can be used to explore a wide range of scientific topics, from biology and chemistry to physics and engineering. In this study, we designed and built a multifunction fluorescent open source in vivo/in vitro imaging system (openIVIS) system that integrates a Raspberry Pi with commercial cameras and LEDs with 3D printed structures combined with an acrylic housing. Our openIVIS provides three excitation wavelengths of 460 nm, 520 nm, and 630 nm integrated with Python control software to enable fluorescent measurements across the full visible light spectrum. To demonstrate the potential applications of our system, we tested its performance against a diverse set of experiments including laboratory assays (measuring fluorescent dyes, using optical nanosensors, and DNA gel electrophoresis) to potentially fieldable applications (plant and mineral imaging). We also tested the potential use for a high school biology environment by imaging small animals and tracking their development over the course of ten days. Our system demonstrated its ability to measure a wide dynamic range fluorescent response from millimolar to picomolar concentrations in the same sample while measuring responses across visible wavelengths. These results demonstrate the power and flexibility of open-source hardware and software and how it can be integrated with customizable manufacturing to create low-cost scientific instruments with a wide range of applications. Our study provides a promising model for the development of low-cost instruments that can be used in both research and education.

Indexed as

ElectronicsMicroscopyAnimalsLightSoftwareTechnology

Identifiers

PMID38498588
PMCPMC10947658

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.