Evidence map›Paper›PMID 38496660›Full record

ArticlebioRxiv : the preprint server for biology2024

DeST-OT: Alignment of Spatiotemporal Transcriptomics Data.

Peter Halmos, Xinhao Liu, Julian Gold, Feng Chen, Li Ding, Benjamin J Raphael

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Peter HalmosDepartment of Computer Science, Princeton University, 35 Olden St, Princeton, NJ 08544.
Xinhao LiuDepartment of Computer Science, Princeton University, 35 Olden St, Princeton, NJ 08544.
Julian GoldCenter for Statistics and Machine Learning, Princeton University, 26 Prospect Ave, Princeton, NJ 08544.
Feng ChenDepartments of Medicine and Genetics, Siteman Cancer Center, Washington University in St. Louis, St. Louis, MO 63110.ORCID 0000-0002-2307-7954
Li DingDepartments of Medicine and Genetics, Siteman Cancer Center, Washington University in St. Louis, St. Louis, MO 63110.
Benjamin J RaphaelDepartment of Computer Science, Princeton University, 35 Olden St, Princeton, NJ 08544.ORCID 0000-0003-1274-048X
Princeton University · USJames S. McDonnell Foundation · USWashington University in St. Louis · US

Funding

Comprehensive and Robust Tools for Analysis of Tumor Heterogeneity and EvolutionU24CA248453 · NCI · PRINCETON UNIVERSITY · PI Benjamin Raphael · 2020 to 2026
$4.7M
NCI NIH HHS U24 CA248453
6 · The paper itself

Abstract

Spatially resolved transcriptomics (SRT) measures mRNA transcripts at thousands of locations within a tissue slice, revealing spatial variations in gene expression and distribution of cell types. In recent studies, SRT has been applied to tissue slices from multiple timepoints during the development of an organism. Alignment of this

Identifiers

PMID38496660
PMCPMC10942402
OpenAlexW4392653497

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.