Evidence map›Paper›PMID 38493146›Full record

ArticleNature communications2024

Structural basis for autoinhibition by the dephosphorylated regulatory domain of Ycf1.

Nitesh Kumar Khandelwal, Thomas M Tomasiak

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Nitesh Kumar KhandelwalDepartment of Chemistry and Biochemistry, University of Arizona, Tucson, AZ, 85721, USA.
Thomas M TomasiakDepartment of Chemistry and Biochemistry, University of Arizona, Tucson, AZ, 85721, USA. tomasiak@arizona.edu.ORCID 0000-0002-5884-5968
University of Arizona · US

Funding

Pacific Northwest Center for Cryo-EM - Screening supplementU24GM129547 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI EVANS, JAMES E, GOUAUX, JAMES E · 2018 to 2023
$54.8M
ATP Binding Cassette (ABC) Transporters in Fungal Drug ToleranceR01AI156270 · NIAID · UNIVERSITY OF ARIZONA · PI TOMASIAK, THOMAS MICHAEL · 2021 to 2025
$1.9M
JEOL JEM-1400 Transmission Electron MicroscopeS10OD011981 · OD · UNIVERSITY OF ARIZONA · PI ELLIOTT, DAVID A · 2012 to 2012
$365k
NIAID NIH HHS R01 AI156270NIGMS NIH HHS U24 GM129547NIH HHS S10 OD011981
6 · The paper itself

Abstract

Yeast Cadmium Factor 1 (Ycf1) sequesters glutathione and glutathione-heavy metal conjugates into yeast vacuoles as a cellular detoxification mechanism. Ycf1 belongs to the C subfamily of ATP Binding Cassette (ABC) transporters characterized by long flexible linkers, notably the regulatory domain (R-domain). R-domain phosphorylation is necessary for activity, whereas dephosphorylation induces autoinhibition through an undefined mechanism. Because of its transient and dynamic nature, no structure of the dephosphorylated Ycf1 exists, limiting understanding of this R-domain regulation. Here, we capture the dephosphorylated Ycf1 using cryo-EM and show that the unphosphorylated R-domain indeed forms an ordered structure with an unexpected hairpin topology bound within the Ycf1 substrate cavity. This architecture and binding mode resemble that of a viral peptide inhibitor of an ABC transporter and the secreted bacterial WXG peptide toxins. We further reveal the subset of phosphorylation sites within the hairpin turn that drive the reorganization of the R-domain conformation, suggesting a mechanism for Ycf1 activation by phosphorylation-dependent release of R-domain mediated autoinhibition.

Indexed as

Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsATP-Binding Cassette TransportersCadmiumGlutathionePeptidesATP-Binding Cassette TransportersCadmiumGlutathionePeptidesSaccharomyces cerevisiae Proteins

Identifiers

PMID38493146
PMCPMC10944535
OpenAlexW4392880833

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.