Evidence map›Paper›PMID 38491343›Full record

ArticleMolecular psychiatry2024

Association of neurotransmitter pathway polygenic risk with specific symptom profiles in psychosis.

Tracy L Warren, Justin D Tubbs, Tyler A Lesh, Mylena B Corona, Sarvenaz S Pakzad, Marina D Albuquerque, Praveena Singh, Vanessa Zarubin, Sarah J Morse, Pak Chung Sham and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular psychiatry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 2 countries.

Tracy L Warren *Department of Neurobiology, Physiology and Behavior, University of California, Davis, CA, USA.ORCID 0000-0001-5125-0868
Justin D Tubbs *Department of Psychiatry, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR.
Tyler A LeshDepartment of Psychiatry and Behavioral Sciences, University of California, Davis, CA, USA.ORCID 0000-0002-6160-3927
Mylena B CoronaDepartment of Neurobiology, Physiology and Behavior, University of California, Davis, CA, USA.
Sarvenaz S PakzadDepartment of Psychiatry and Behavioral Sciences, University of California, Davis, CA, USA.
Marina D AlbuquerqueDepartment of Psychiatry and Behavioral Sciences, University of California, Davis, CA, USA.
Praveena SinghDepartment of Psychiatry and Behavioral Sciences, University of California, Davis, CA, USA.
Vanessa ZarubinDepartment of Psychiatry and Behavioral Sciences, University of California, Davis, CA, USA.ORCID 0000-0002-3925-4871
Sarah J MorseDepartment of Neurobiology, Physiology and Behavior, University of California, Davis, CA, USA.
Pak Chung ShamDepartment of Psychiatry, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR. pcsham@hku.hk.
Cameron S CarterDepartment of Psychiatry and Behavioral Sciences, University of California, Davis, CA, USA. cscarte1@hs.uci.edu.
Alex S NordDepartment of Neurobiology, Physiology and Behavior, University of California, Davis, CA, USA. asnord@ucdavis.edu.ORCID 0000-0003-4259-7514
University of California, Davis · USBroad Institute · USHKU-Pasteur Research Pole · HKNorthwestern University · USUniversity of California, Irvine · USUniversity of California System · USWashington University in St. Louis · US

Funding

PATHOPHYSIOLOGY OF COGNITIVE DISABILITY IN SCHIZOPHRENIAR01MH059883 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CARTER, CAMERON S. · 2000 to 2017
$6.1M
Functional Elucidation of the Sequence-Encoded Regulatory Activity of Enhancers in Vivo in the BrainR35GM119831 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Alexander Nord · 2016 to 2026
$3.9M
Training Program in Basic NeuroscienceT32MH082174 · NIMH · UNIVERSITY OF CALIFORNIA AT DAVIS · PI W MARTIN USREY · 2007 to 2026
$3.1M
Learning, Memory, and Plasticity (LaMP) Training ProgramT32MH112507 · NIMH · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Karen Zito · 2017 to 2026
$2.4M
UC Davis Advancing Diversity in the Neuroscience Research (ADNR) ProgramR25NS112130 · NINDS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI USREY, W MARTIN · 2019 to 2023
$1.2M
Identifying enhancers in schizophrenia and bipolar disorder-associated noncoding eQTLs during cortical synaptic organizationF31MH129135 · NIMH · UNIVERSITY OF CALIFORNIA AT DAVIS · PI WARREN, TRACY LEIGH · 2022 to 2024
$100k
NIGMS NIH HHS R35 GM119831NIMH NIH HHS F31 MH129135NIMH NIH HHS R01 MH059883NIMH NIH HHS T32 MH082174NIMH NIH HHS T32 MH112507NINDS NIH HHS R25 NS112130UC | University of California, Davis (UC Davis) UC Davis-HKU Collaboration GrantU.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) F31MH129135U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) R01MH059883U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) T32MH112507
6 · The paper itself

Abstract

A primary goal of psychiatry is to better understand the pathways that link genetic risk to psychiatric symptoms. Here, we tested association of diagnosis and endophenotypes with overall and neurotransmitter pathway-specific polygenic risk in patients with early-stage psychosis. Subjects included 205 demographically diverse cases with a psychotic disorder who underwent comprehensive psychiatric and neurological phenotyping and 115 matched controls. Following genotyping, we calculated polygenic scores (PGSs) for schizophrenia (SZ) and bipolar disorder (BP) using Psychiatric Genomics Consortium GWAS summary statistics. To test if overall genetic risk can be partitioned into affected neurotransmitter pathways, we calculated pathway PGSs (pPGSs) for SZ risk affecting each of four major neurotransmitter systems: glutamate, GABA, dopamine, and serotonin. Psychosis subjects had elevated SZ PGS versus controls; cases with SZ or BP diagnoses had stronger SZ or BP risk, respectively. There was no significant association within psychosis cases between individual symptom measures and overall PGS. However, neurotransmitter-specific pPGSs were moderately associated with specific endophenotypes; notably, glutamate was associated with SZ diagnosis and with deficits in cognitive control during task-based fMRI, while dopamine was associated with global functioning. Finally, unbiased endophenotype-driven clustering identified three diagnostically mixed case groups that separated on primary deficits of positive symptoms, negative symptoms, global functioning, and cognitive control. All clusters showed strong genome-wide risk. Cluster 2, characterized by deficits in cognitive control and negative symptoms, additionally showed specific risk concentrated in glutamatergic and GABAergic pathways. Due to the intensive characterization of our subjects, the present study was limited to a relatively small cohort. As such, results should be followed up with additional research at the population and mechanism level. Our study suggests pathway-based PGS analysis may be a powerful path forward to study genetic mechanisms driving psychiatric endophenotypes.

Indexed as

Bipolar DisorderEndophenotypesGenetic Predisposition to DiseaseGenome-Wide Association StudyMultifactorial InheritanceNeurotransmitter AgentsPsychotic DisordersSchizophreniaAdultCase-Control StudiesDopamineFemaleGenotypeGlutamic AcidHumansMagnetic Resonance ImagingDopamineGlutamic AcidNeurotransmitter Agents

Identifiers

PMID38491343
PMCPMC11412910
OpenAlexW4392858938

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.