Evidence map›Paper›PMID 38491296›Full record

ArticleThe EMBO journal2024

MemPrep, a new technology for isolating organellar membranes provides fingerprints of lipid bilayer stress.

John Reinhard, Leonhard Starke, Christian Klose, Per Haberkant, Henrik Hammarén, Frank Stein, Ofir Klein, Charlotte Berhorst, Heike Stumpf, James P Sáenz and 3 more

Open access · diamondAbstract read
In one paragraph

Article in The EMBO journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

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  8. The Inner Nuclear Membrane Has a Unique Lipid Signature.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
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  17. Reconstitution of ORP-mediated lipid exchange coupled to PI4P metabolism.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

John ReinhardSaarland University, Medical Biochemistry and Molecular Biology, Homburg, Germany.ORCID http://orcid.org/0000-0001-6363-2994
Leonhard StarkeSaarland University, Theoretical Physics and Center for Biophysics, Saarbrücken, Germany.
Christian KloseLipotype GmbH, Dresden, Germany.
Per HaberkantEMBL Heidelberg, Proteomics Core Facility, Heidelberg, Germany.
Henrik HammarénEMBL Heidelberg, Genome Biology, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-8534-2530
Frank SteinEMBL Heidelberg, Proteomics Core Facility, Heidelberg, Germany.ORCID http://orcid.org/0000-0001-9695-1692
Ofir KleinWeizmann Institute of Science, Department of Molecular Genetics, Rehovot, Israel.ORCID http://orcid.org/0000-0002-9635-4481
Charlotte BerhorstSaarland University, Medical Biochemistry and Molecular Biology, Homburg, Germany.
Heike StumpfSaarland University, Medical Biochemistry and Molecular Biology, Homburg, Germany.
James P SáenzTechnische Universität Dresden, B CUBE, Dresden, Germany.ORCID http://orcid.org/0000-0001-8901-4377
Jochen HubSaarland University, Theoretical Physics and Center for Biophysics, Saarbrücken, Germany.ORCID http://orcid.org/0000-0001-7716-1767
Maya SchuldinerWeizmann Institute of Science, Department of Molecular Genetics, Rehovot, Israel.ORCID http://orcid.org/0000-0001-9947-115X
Robert ErnstSaarland University, Medical Biochemistry and Molecular Biology, Homburg, Germany. robert.ernst@uks.eu.ORCID http://orcid.org/0000-0002-0283-3490
Saarland University · DEEuropean Molecular Biology Laboratory · DEWeizmann Institute of Science · ILTechnische Universität Dresden · DE

Funding

Deutsche Forschungsgemeinschaft (DFG) SFB1027Deutsche Forschungsgemeinschaft (DFG) SFB894EC | ERC | HORIZON EUROPE European Research Council (ERC) 866011Volkswagen Foundation (VolkswagenStiftung) #93089,#93092,#93090
6 · The paper itself

Abstract

Biological membranes have a stunning ability to adapt their composition in response to physiological stress and metabolic challenges. Little is known how such perturbations affect individual organelles in eukaryotic cells. Pioneering work has provided insights into the subcellular distribution of lipids in the yeast Saccharomyces cerevisiae, but the composition of the endoplasmic reticulum (ER) membrane, which also crucially regulates lipid metabolism and the unfolded protein response, remains insufficiently characterized. Here, we describe a method for purifying organelle membranes from yeast, MemPrep. We demonstrate the purity of our ER membrane preparations by proteomics, and document the general utility of MemPrep by isolating vacuolar membranes. Quantitative lipidomics establishes the lipid composition of the ER and the vacuolar membrane. Our findings provide a baseline for studying membrane protein biogenesis and have important implications for understanding the role of lipids in regulating the unfolded protein response (UPR). The combined preparative and analytical MemPrep approach uncovers dynamic remodeling of ER membranes in stressed cells and establishes distinct molecular fingerprints of lipid bilayer stress.

Indexed as

Lipid BilayersSaccharomyces cerevisiae ProteinsEndoplasmic ReticulumEndoplasmic Reticulum StressLipid MetabolismSaccharomyces cerevisiaeTechnologyUnfolded Protein ResponseLipid BilayersSaccharomyces cerevisiae ProteinsER StressLipid Bilayer StressMemPrepOrganelle LipidomicsUPR

Identifiers

PMID38491296
PMCPMC11021466
OpenAlexW4392868863

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.