Evidence map›Paper›PMID 38491227›Full record

ArticleCommunications biology2024

Characterization of Omicron BA.4.6, XBB, and BQ.1.1 subvariants in hamsters.

Peter J Halfmann, Kiyoko Iwatsuki-Horimoto, Makoto Kuroda, Yuichiro Hirata, Seiya Yamayoshi, Shun Iida, Ryuta Uraki, Mutsumi Ito, Hiroshi Ueki, Yuri Furusawa and 9 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 2 countries.

Peter J Halfmann *Influenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, 53711, USA.
Kiyoko Iwatsuki-Horimoto *Division of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.ORCID 0000-0002-8266-020X
Makoto Kuroda *Influenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, 53711, USA.
Yuichiro Hirata *Department of Pathology, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan.
Seiya Yamayoshi *Division of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.ORCID 0000-0001-7768-5157
Shun IidaDepartment of Pathology, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan.ORCID 0000-0003-2258-9031
Ryuta UrakiDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.ORCID 0000-0003-0890-1922
Mutsumi ItoDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.
Hiroshi UekiDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.ORCID 0000-0002-6557-0771
Yuri FurusawaDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.
Yuko Sakai-TagawaDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.
Maki KisoDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.
Tammy ArmbrustInfluenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, 53711, USA.
Sam SpyraInfluenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, 53711, USA.
Ken MaedaDepartment of Veterinary Science, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan.ORCID 0000-0002-3488-5439
Zhongde WangDepartment of Animal, Dairy, and Veterinary Sciences, College of Agriculture and Applied Sciences, Utah State University, Logan, UT, 84322, USA.ORCID 0000-0003-2441-4729
Masaki ImaiDivision of Virology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.ORCID 0000-0001-6988-1975
Tadaki SuzukiDepartment of Pathology, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan. tksuzuki@nih.go.jp.ORCID 0000-0002-3820-9542
Yoshihiro KawaokaInfluenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, 53711, USA. yoshihiro.kawaoka@wisc.edu.ORCID 0000-0001-5061-8296
Tokyo University of Science · JPUniversity of Wisconsin–Madison · USNational Institute of Infectious Diseases · JPUtah State University · US

Funding

NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00014 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GARCIA-SASTRE, ADOLFO · 2021 to 2025
$62.6M
NIAID NIH HHS 75N93021C00014
6 · The paper itself

Abstract

During the Omicron wave, previous variants such as BA.2, BA.4, and BA.5 were replaced by newer variants with additional mutations in the spike protein. These variants, BA.4.6, BQ.1.1, and XBB, have spread in different countries with different degrees of success. Here, we evaluated the replicative ability and pathogenicity of BA.4.6, BQ1.1, and XBB clinical isolates in male Syrian hamsters. Although we found no substantial differences in weight change among hamsters infected with these Omicron subvariants, the replicative ability of BQ.1.1 and XBB in lung tissue was higher than that of BA.4.6 and BA.5. Of note, BQ.1.1 was lethal in both male and female transgenic human ACE2 hamsters. In competition assays, XBB replicated better than BQ.1.1 in the nasal turbinate tissues of female hamsters previously infected with Omicron BA.2. These results suggest that newer Omicron subvariants in the XBB family are still evolving and should be closely monitored.

Indexed as

Biological AssayDNA ReplicationAnimalsAnimals, Genetically ModifiedCricetinaeFemaleHumansMaleMesocricetusMutation

Identifiers

PMID38491227
PMCPMC10943235
OpenAlexW4392850417

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.