Evidence map›Paper›PMID 38489602›Full record

ArticleThe Plant cell2024

The OsEIL1-OsWOX11 transcription factor module controls rice crown root development in response to soil compaction.

Yuxiang Li, Juan Wang, Yadi Gao, Bipin K Pandey, Lucas León Peralta Ogorek, Yu Zhao, Ruidang Quan, Zihan Zhao, Lei Jiang, Rongfeng Huang and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Plant cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
12.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Microbial drivers of root plasticity.The New phytologist · 2025
    Review
  7. Needs and opportunities to future-proof crops and the use of crop systems to mitigate atmospheric change.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Yuxiang LiBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China.ORCID 0000-0002-6946-8547
Juan WangBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China.ORCID 0000-0003-1636-4450
Yadi GaoBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China.ORCID 0009-0008-3335-2244
Bipin K PandeyPlant and Crop Science Department, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, United Kingdom.ORCID 0000-0002-9614-1347
Lucas León Peralta OgorekPlant and Crop Science Department, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, United Kingdom.ORCID 0000-0002-9178-7050
Yu ZhaoNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0003-4451-9907
Ruidang QuanBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China.ORCID 0000-0002-0206-4759
Zihan ZhaoBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China.ORCID 0009-0006-7467-7235
Lei JiangBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China.ORCID 0009-0006-7414-6805
Rongfeng HuangBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China.ORCID 0000-0002-3039-0850
Hua QinBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China.ORCID 0000-0001-9788-7290
Chinese Academy of Agricultural Sciences · CNUniversity of Nottingham · GBHuazhong Agricultural University · CN

Funding

Agricultural Science and Technology Innovation Program CAAS-ZDRW202201BBSRC BB/V00557X/1Central Public-interest Scientific Institution Basal Research Fund 1610392023004Chinese Academy of Agricultural SciencesEMBO ALTF 619-2022National Key R&D Program of China 2020YFE0202300National Natural Science Foundation of China 32030079
6 · The paper itself

Abstract

Optimizing the root architecture of crops is an effective strategy for improving crop yields. Soil compaction is a serious global problem that limits crop productivity by restricting root growth, but the underlying molecular mechanisms are largely unclear. Here, we show that ethylene stimulates rice (Oryza sativa) crown root development in response to soil compaction. First, we demonstrate that compacted soil promotes ethylene production and the accumulation of ETHYLENE INSENSITIVE 3-LIKE 1 (OsEIL1) in rice roots, stimulating crown root primordia initiation and development, thereby increasing crown root number in lower stem nodes. Through transcriptome profiling and molecular analyses, we reveal that OsEIL1 directly activates the expression of WUSCHEL-RELATED HOMEOBOX 11 (OsWOX11), an activator of crown root emergence and growth, and that OsWOX11 mutations delay crown root development, thus impairing the plant's response to ethylene and soil compaction. Genetic analysis demonstrates that OsWOX11 functions downstream of OsEIL1. In summary, our results demonstrate that the OsEIL1-OsWOX11 module regulates ethylene action during crown root development in response to soil compaction, providing a strategy for the genetic modification of crop root architecture and grain agronomic traits.

Indexed as

Gene Expression Regulation, PlantOryzaPlant ProteinsPlant RootsTranscription FactorsEthylenesSoilethyleneEthylenesPlant ProteinsSoilTranscription Factors

Identifiers

PMID38489602
PMCPMC11132869
OpenAlexW4392856178

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.