ArticlePLoS computational biology2024
Evolutionary graph theory beyond pairwise interactions: Higher-order network motifs shape times to fixation in structured populations.
Article in PLoS computational biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- Local negative frequency dependence can decrease global coexistence in fragmented populations.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- Maintaining diversity in structured populations.PNAS nexus · 2025Article
- Crossover operators for molecular graphs with an application to virtual drug screening.Journal of cheminformatics · 2025Article
- Colonization times in Moran process on graphs.PLoS computational biology · 2025Article
- Competition for resources can reshape the evolutionary properties of spatial structure.PLoS computational biology · 2024Article
- Mutant fate in spatially structured populations on graphs: Connecting models to experiments.PLoS computational biology · 2024Article
- Evolutionary graph theory beyond single mutation dynamics: on how network-structured populations cross fitness landscapes.Genetics · 2024Article
- Competition for resources can reshape the evolutionary properties of spatial structure.bioRxiv : the preprint server for biology · 2024Article
- Fixation dynamics on hypergraphs.PLoS computational biology · 2023Article
- Suppressors of fixation can increase average fitness beyond amplifiers of selection.Proceedings of the National Academy of Sciences of the United States of America · 2022Article
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Authors and funding
2 authors.
Funding
Abstract
To design population topologies that can accelerate rates of solution discovery in directed evolution problems or for evolutionary optimization applications, we must first systematically understand how population structure shapes evolutionary outcome. Using the mathematical formalism of evolutionary graph theory, recent studies have shown how to topologically build networks of population interaction that increase probabilities of fixation of beneficial mutations, at the expense, however, of longer fixation times, which can slow down rates of evolution, under elevated mutation rate. Here we find that moving beyond dyadic interactions in population graphs is fundamental to explain the trade-offs between probabilities and times to fixation of new mutants in the population. We show that higher-order motifs, and in particular three-node structures, allow the tuning of times to fixation, without changes in probabilities of fixation. This gives a near-continuous control over achieving solutions that allow for a wide range of times to fixation. We apply our algorithms and analytic results to two evolutionary optimization problems and show that the rate of solution discovery can be tuned near continuously by adjusting the higher-order topology of the population. We show that the effects of population structure on the rate of evolution critically depend on the optimization landscape and find that decelerators, with longer times to fixation of new mutants, are able to reach the optimal solutions faster than accelerators in complex solution spaces. Our results highlight that no one population topology fits all optimization applications, and we provide analytic and computational tools that allow for the design of networks suitable for each specific task.
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