Evidence map›Paper›PMID 38489285›Full record

ArticlePloS one2024

Detection of pathogenic Leptospira with rapid extraction followed by recombinase polymerase amplification (RPA) and quantitative polymerase chain reaction (qPCR) assay-A comprehensive study from Sri Lanka.

Hansi Uduwawala, Aresha Manamperi, Gayana P S Gunaratna, Lilani Karunanayake, Arianna Ceruti, Ahmed Abd El Wahed, Lakkumar Fernando, Ranjan Premaratna, Menaka Hapugoda

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.1field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Hansi UduwawalaMolecular Medicine Unit, Faculty of Medicine, University of Kelaniya, Ragama, Sri Lanka.
Aresha ManamperiMolecular Medicine Unit, Faculty of Medicine, University of Kelaniya, Ragama, Sri Lanka.
Gayana P S GunaratnaDepartment of Medical Microbiology, Faculty of Medicine, University of Kelaniya, Ragama, Sri Lanka.
Lilani KarunanayakeNational Reference Laboratory for Leptospirosis, Medical Research Institute, Colombo, Sri Lanka.
Arianna CerutiInstitute of Animal Hygiene and Veterinary Public Health, Leipzig University, Leipzig, Germany.
Ahmed Abd El WahedInstitute of Animal Hygiene and Veterinary Public Health, Leipzig University, Leipzig, Germany.ORCID 0000-0003-3347-6075
Lakkumar FernandoCentre for Clinical Management of Dengue & Dengue Haemorrhagic Fever, District General Hospital, Negombo, Sri Lanka.
Ranjan PremaratnaDepartment of Medicine, Faculty of Medicine, University of Kelaniya, Ragama, Sri Lanka.
Menaka HapugodaMolecular Medicine Unit, Faculty of Medicine, University of Kelaniya, Ragama, Sri Lanka.
University of Kelaniya · LKLeipzig University · DEMedical Research Institute · LK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Leptospirosis is the most widespread zoonosis in the world. The disease is more prevalent in tropical regions where the majority of developing countries are located. Leptospirosis is considered a protean manifestation zoonosis with severity of the disease ranging from a mild febrile illness to a severe and life-threatening illness. Clinical symptoms of leptospirosis overlap with other tropical febrile illnesses. Early, rapid, and definitive diagnosis is important for effective patient management. Since Polymerase Chain Reaction (PCR)-based assays are not readily available in most clinical settings, there is a need for an affordable, simple, and rapid diagnostic test. Quantitative PCR (qPCR) and Recombinase Polymerase Amplification (RPA) were implemented at the Faculty of Medicine, University of Kelaniya, and a prospective study to evaluate RPA for diagnosis of acute phase of leptospirosis was conducted. Results indicate that RPA and qPCR were positive in 81% (98/121) of the total positive and acute clinical samples. Of the 81 positive MAT confirmed patients 60 (74%) and 53 (65%) were positive with qPCR and RPA respectively. Retrospective evaluation revealed a high diagnostic accuracy (sensitivity-70% and specificity-87%) of RPA compared to MAT as the reference gold standard. Results further suggest that there is no significant difference between the two assays, qPCR and RPA-SwiftX (P = 0.40). Laboratory procedures for the extraction and detection by qPCR in the laboratory have been optimized to obtain results within 6 hours. However, the RPA-SwiftX method under field conditions took 35 minutes. The RPA-SwiftX method could replace the qPCR which shows similar sensitivity and specificity. Therefore, RPA established under the current study presents a powerful tool for the early and rapid diagnosis of leptospirosis at point-of-care.

Indexed as

LeptospiraLeptospirosisAnimalsHumansNucleic Acid Amplification TechniquesNucleotidyltransferasesPolymerase Chain ReactionProspective StudiesReal-Time Polymerase Chain ReactionRecombinasesRetrospective StudiesSensitivity and SpecificitySri LankaZoonosesNucleotidyltransferasesRecombinases

Identifiers

PMID38489285
PMCPMC10942058
OpenAlexW4392857326

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.