Evidence map›Paper›PMID 38488504›Full record

ReviewCancer research2024

NCI Cancer Research Data Commons: Cloud-Based Analytic Resources.

David Pot, Zelia Worman, Alexander Baumann, Shirish Pathak, Rowan Beck, Erin Beck, Katherine Thayer, Tanja M Davidsen, Erika Kim, Brandi Davis-Dusenbery and 5 more

Abstract readReview
In one paragraph

Review in Cancer research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

David Pot *General Dynamics Information Technology, Falls Church, Virginia.ORCID 0000-0002-1480-9826
Zelia Worman *Velsera (Seven Bridges), Charlestown, Massachusetts.ORCID 0000-0002-7619-7466
Alexander Baumann *Broad Institute, Cambridge, Massachusetts.ORCID 0000-0001-7899-3389
Shirish PathakFrederick National Laboratory for Cancer Research, Frederick, Maryland.ORCID 0009-0000-4046-3710
Rowan BeckVelsera (Seven Bridges), Charlestown, Massachusetts.ORCID 0000-0003-2826-940X
Erin BeckCenter for Biomedical Informatics and Information Technology, NCI, Rockville, Maryland.
Katherine ThayerBroad Institute, Cambridge, Massachusetts.ORCID 0000-0002-0848-5853
Tanja M DavidsenCenter for Biomedical Informatics and Information Technology, NCI, Rockville, Maryland.ORCID 0009-0006-5102-3116
Erika KimCenter for Biomedical Informatics and Information Technology, NCI, Rockville, Maryland.ORCID 0000-0001-8799-9029
Brandi Davis-DusenberyVelsera (Seven Bridges), Charlestown, Massachusetts.ORCID 0000-0001-7811-8613
John OtridgeFrederick National Laboratory for Cancer Research, Frederick, Maryland.ORCID 0009-0007-7018-916X
Todd PihlFrederick National Laboratory for Cancer Research, Frederick, Maryland.ORCID 0000-0002-5471-3300
CRDC Program
Jill S Barnholtz-Sloan *Center for Biomedical Informatics and Information Technology, NCI, Rockville, Maryland.ORCID 0000-0001-6190-9304
Anthony R Kerlavage *Center for Biomedical Informatics and Information Technology, NCI, Rockville, Maryland.ORCID 0000-0002-3954-9653

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
NCI NIH HHS 75N91019D00024NCI NIH HHS HHSN261201400008CNCI NIH HHS HHSN261201500003CNCI NIH HHS HHSN261201500003I
6 · The paper itself

Abstract

The NCI's Cloud Resources (CR) are the analytical components of the Cancer Research Data Commons (CRDC) ecosystem. This review describes how the three CRs (Broad Institute FireCloud, Institute for Systems Biology Cancer Gateway in the Cloud, and Seven Bridges Cancer Genomics Cloud) provide access and availability to large, cloud-hosted, multimodal cancer datasets, as well as offer tools and workspaces for performing data analysis where the data resides, without download or storage. In addition, users can upload their own data and tools into their workspaces, allowing researchers to create custom analysis workflows and integrate CRDC-hosted data with their own. See related articles by Brady et al., p. 1384, Wang et al., p. 1388, and Kim et al., p. 1404.

Indexed as

Cloud ComputingNational Cancer Institute (U.S.)NeoplasmsBiomedical ResearchComputational BiologyGenomicsHumansUnited States

Identifiers

PMID38488504
PMCPMC11063685

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.