Evidence map›Paper›PMID 38486289›Full record

ArticleJournal of cheminformatics2024

Advancing material property prediction: using physics-informed machine learning models for viscosity.

Alex K Chew, Matthew Sender, Zachary Kaplan, Anand Chandrasekaran, Jackson Chief Elk, Andrea R Browning, H Shaun Kwak, Mathew D Halls, Mohammad Atif Faiz Afzal

Abstract read
In one paragraph

Article in Journal of cheminformatics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Alex K ChewSchrödinger, Inc., New York, 10036, USA.
Matthew SenderSchrödinger, Inc., Portland, OR, 97204, USA.
Zachary KaplanSchrödinger, Inc., New York, 10036, USA.
Anand ChandrasekaranSchrödinger, Inc., New York, 10036, USA.
Jackson Chief ElkSchrödinger, Inc., Portland, OR, 97204, USA.
Andrea R BrowningSchrödinger, Inc., Portland, OR, 97204, USA.
H Shaun KwakSchrödinger, Inc., Portland, OR, 97204, USA.
Mathew D HallsSchrödinger, Inc., San Diego, CA, 92121, USA.
Mohammad Atif Faiz AfzalSchrödinger, Inc., Portland, OR, 97204, USA. atif.afzal@schrodinger.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In materials science, accurately computing properties like viscosity, melting point, and glass transition temperatures solely through physics-based models is challenging. Data-driven machine learning (ML) also poses challenges in constructing ML models, especially in the material science domain where data is limited. To address this, we integrate physics-informed descriptors from molecular dynamics (MD) simulations to enhance the accuracy and interpretability of ML models. Our current study focuses on accurately predicting viscosity in liquid systems using MD descriptors. In this work, we curated a comprehensive dataset of over 4000 small organic molecules' viscosities from scientific literature, publications, and online databases. This dataset enabled us to develop quantitative structure-property relationships (QSPR) consisting of descriptor-based and graph neural network models to predict temperature-dependent viscosities for a wide range of viscosities. The QSPR models reveal that including MD descriptors improves the prediction of experimental viscosities, particularly at the small data set scale of fewer than a thousand data points. Furthermore, feature importance tools reveal that intermolecular interactions captured by MD descriptors are most important for viscosity predictions. Finally, the QSPR models can accurately capture the inverse relationship between viscosity and temperature for six battery-relevant solvents, some of which were not included in the original data set. Our research highlights the effectiveness of incorporating MD descriptors into QSPR models, which leads to improved accuracy for properties that are difficult to predict when using physics-based models alone or when limited data is available.

Indexed as

Classical molecular dynamics simulationsMachine learningOrganic moleculesPhysical propertiesQuantitative structure–property relationshipsViscosity

Identifiers

PMID38486289
PMCPMC10938832

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.