Evidence map›Paper›PMID 38483922›Full record

ArticlePloS one2024

A semi-automated and high-throughput approach for the detection of honey bee viruses in bee samples.

Sofia Levin Nikulin, Poppy J Hesketh-Best, Dean A Mckeown, Marla Spivak, Declan C Schroeder

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sofia Levin NikulinDepartment of Entomology, University of Minnesota, Saint Paul, Minnesota, United States of America.
Poppy J Hesketh-BestDepartment of Veterinary Population Medicine, University of Minnesota, Saint Paul, Minnesota, United States of America.ORCID 0000-0002-0284-6689
Dean A MckeownDepartment of Veterinary Population Medicine, University of Minnesota, Saint Paul, Minnesota, United States of America.
Marla SpivakDepartment of Entomology, University of Minnesota, Saint Paul, Minnesota, United States of America.
Declan C SchroederDepartment of Veterinary Population Medicine, University of Minnesota, Saint Paul, Minnesota, United States of America.ORCID 0000-0001-5991-2838
University of Minnesota · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Deformed wing virus (DWV) was first detected in dead honey bees in 1982 but has been in honey bees for at least 300 years. Due to its high prevalence and virulence, they have been linked with the ongoing decline in honey bee populations worldwide. A rapid, simple, semi-automated, high-throughput, and cost-effective method of screening colonies for viruses would benefit bee research and the beekeeping industry. Here we describe a semi-automated approach that combines an RNA-grade liquid homogenizer followed by magnetic bead capture for total virus nucleic acid extraction. We compare it to the more commonly applied nucleic acid column-based purification method and use qPCR plus Oxford Nanopore Technologies sequencing to evaluate the accuracy of analytical results for both methods. Our results showed high reproducibility and accuracy for both approaches. The semi-automated method described here allows for faster screening of viral loads in units of 96 samples at a time. We developed this method to monitor viral loads in honey bee colonies, but it could be easily applied for any PCR or genomic-based screening assays.

Indexed as

Nucleic AcidsRNA VirusesVirusesAnimalsBeesReproducibility of ResultsNucleic Acids

Identifiers

PMID38483922
PMCPMC10939240
OpenAlexW4392818660

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.