Evidence map›Paper›PMID 38483896›Full record

ArticlePloS one2024

JUN mRNA translation regulation is mediated by multiple 5' UTR and start codon features.

Angélica M González-Sánchez, Eimy A Castellanos-Silva, Gabriela Díaz-Figueroa, Jamie H D Cate

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. A dynamic compositional equilibrium governs mRNA recognition by eIF3.bioRxiv : the preprint server for biology · 2024
    Article
  8. Decoding RNA Metabolism by RNA-linked CRISPR Screening in Human Cells.bioRxiv : the preprint server for biology · 2024
    Article
  9. Article
4 · The record

Corrections and comments

  • Update of
    2023
5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Angélica M González-SánchezComparative Biochemistry Graduate Program, University of California, Berkeley, Berkeley, CA, United States of America.
Eimy A Castellanos-SilvaDepartment of Biochemistry and Molecular Biology, University of California, Davis, Davis, CA, United States of America.
Gabriela Díaz-FigueroaDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, United States of America.
Jamie H D CateDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, United States of America.ORCID 0000-0001-5965-7902
University of California, Berkeley · USUniversity of California, Davis · US

Funding

The Role of the Ribosome in the Accuracy of TranslationR01GM065050 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI CATE, JAMIE H · 2001 to 2022
$7.4M
Mechanisms of Translation Control in HumansR35GM148352 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI JAMIE H CATE · 2023 to 2026
$2.3M
NIGMS NIH HHS R01 GM065050NIGMS NIH HHS R35 GM148352
6 · The paper itself

Abstract

Regulation of mRNA translation by eukaryotic initiation factors (eIFs) is crucial for cell survival. In humans, eIF3 stimulates translation of the JUN mRNA which encodes the transcription factor JUN, an oncogenic transcription factor involved in cell cycle progression, apoptosis, and cell proliferation. Previous studies revealed that eIF3 activates translation of the JUN mRNA by interacting with a stem loop in the 5' untranslated region (5' UTR) and with the 5' -7-methylguanosine cap structure. In addition to its interaction site with eIF3, the JUN 5' UTR is nearly one kilobase in length, and has a high degree of secondary structure, high GC content, and an upstream start codon (uAUG). This motivated us to explore the complexity of JUN mRNA translation regulation in human cells. Here we find that JUN translation is regulated in a sequence and structure-dependent manner in regions adjacent to the eIF3-interacting site in the JUN 5' UTR. Furthermore, we identify contributions of an additional initiation factor, eIF4A, in JUN regulation. We show that enhancing the interaction of eIF4A with JUN by using the compound Rocaglamide A (RocA) represses JUN translation. We also find that both the upstream AUG (uAUG) and the main AUG (mAUG) contribute to JUN translation and that they are conserved throughout vertebrates. Our results reveal additional layers of regulation for JUN translation and show the potential of JUN as a model transcript for understanding multiple interacting modes of translation regulation.

Indexed as

Eukaryotic Initiation Factor-3Protein Biosynthesis5' Untranslated RegionsAnimalsCodon, InitiatorHumansRNA, MessengerTranscription Factors5' Untranslated RegionsCodon, InitiatorEukaryotic Initiation Factor-3RNA, MessengerTranscription Factors

Identifiers

PMID38483896
PMCPMC10939236
OpenAlexW4392799570

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.