Evidence map›Paper›PMID 38481374›Full record

ArticleProteins2025

Efficient and accurate binding free energy calculation of Aβ

Christina V Frost, Nadine Schwierz, Martin Zacharias

Open access · hybridAbstract read
In one paragraph

Article in Proteins, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 96% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 0 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Christina V FrostCenter of Functional Protein Assemblies, Technical University of Munich, Garching, Germany.
Nadine SchwierzInstitute of Physics, University of Augsburg, Augsburg, Germany.
Martin ZachariasCenter of Functional Protein Assemblies, Technical University of Munich, Garching, Germany.ORCID 0000-0001-5163-2663
Technical University of Munich · DEUniversity of Augsburg · DE

Funding

Gauss Centre for Supercomputing/Leibniz Supercomputing Centre pr27zaGerman Research Foundation SFB1035/B02
6 · The paper itself

Abstract

Self-assembled aggregation of peptides and proteins into regular amyloid fibrils is associated with several neurodegenerative diseases. In case of Alzheimer's disease proteolytic cleavage products of the amyloid precursor protein form pathological amyloid-beta fibrils in a nucleation and propagation phase. The molecular details and thermodynamic driving forces of amyloid formation are not well understood, but are of high relevance for potential pharmacological interference. We used atomistic binding free energy simulations to calculate the free energy of protofilament propagation by an additional Aβ

Indexed as

AmyloidAmyloid beta-PeptidesPeptide FragmentsAlzheimer DiseaseBinding SitesHumansMolecular Dynamics SimulationProtein BindingProtein ConformationThermodynamicsAmyloidAmyloid beta-PeptidesPeptide FragmentsAlzheimer's diseaseamyloid‐beta formationamyloid propagationbinding free energy calculationdisordered peptide bindingmolecular dynamics simulation

Identifiers

PMID38481374
PMCPMC12260347
OpenAlexW4392817013

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.