Evidence map›Paper›PMID 38480844›Full record

ArticleScientific reports2024

Determination of internal controls for quantitative gene expression of Spodoptera litura under microbial pesticide stress.

Shuang Wu, Yunmi Luo, Zhihong Zeng, Ying Yu, Shicai Zhang, Yan Hu, Lei Chen

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Shuang WuInstitute of Vegetable and Flower Research, Chongqing Academy of Agricultural Sciences, Chongqing, 401329, China.
Yunmi LuoInstitute of Vegetable and Flower Research, Chongqing Academy of Agricultural Sciences, Chongqing, 401329, China.
Zhihong ZengInstitute of Vegetable and Flower Research, Chongqing Academy of Agricultural Sciences, Chongqing, 401329, China.
Ying YuInstitute of Vegetable and Flower Research, Chongqing Academy of Agricultural Sciences, Chongqing, 401329, China.
Shicai ZhangInstitute of Vegetable and Flower Research, Chongqing Academy of Agricultural Sciences, Chongqing, 401329, China.
Yan HuInstitute of Vegetable and Flower Research, Chongqing Academy of Agricultural Sciences, Chongqing, 401329, China.
Lei ChenInstitute of Vegetable and Flower Research, Chongqing Academy of Agricultural Sciences, Chongqing, 401329, China. chenlei112301@163.com.

Funding

General Project of Chongqing Natural Science Foundation CSTB2023NSCQ-MSX0608Municipal Financial Fund Project of Chongqing Academy of Agricultural Sciences cqaas2023sjczzd011
6 · The paper itself

Abstract

Quantitative real-time polymerase chain reaction (qRT-PCR) has become a commonly used method for the quantification of gene expression. However, accurate qRT-PCR analysis requires a valid internal reference for data normalization. To determine the valid reference characterized with low expression variability among Spodoptera litura samples after microbial pesticide treatments, nine housekeeping genes, glyceraldehyde-3-phosphate dehydrogenase (GAPDH), arginine kinase, ubiquitin C, actin-5C (ACT5C), actin, ribosomal protein S13 (RPS13), tubulin, acidic ribosomal protein P0 (RPLP0) and ubiquinol-cytochrome c reductase, were evaluated for their suitability using geNorm, Normfinder, BestKeeper, RefFinder and the comparative delta CT methods in this study. S. litura larvae after direct treatment (larvae were immersed in biopesticides), indirect treatment (larvae were fed with biopesticide immersed artificial diets) and comprehensive treatment (larvae were treated with the first two treatments in sequence), respectively with Metarhizium anisopliae, Empedobacter brevis and Bacillus thuringiensis, were investigated. The results indicated that the best sets of internal references were as follows: RPLP0 and ACT5C for direct treatment conditions; RPLP0 and RPS13 for indirect treatment conditions; RPS13 and GAPDH for comprehensive treatment conditions; RPS13 and RPLP0 for all the samples. These results provide valuable bases for further genetic researches in S. litura.

Indexed as

ActinsGene Expression ProfilingAnimalsGene ExpressionGlyceraldehyde-3-Phosphate DehydrogenasesReal-Time Polymerase Chain ReactionSpodopteraActinsGlyceraldehyde-3-Phosphate Dehydrogenases

Identifiers

PMID38480844
PMCPMC10937984

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.