Evidence map›Paper›PMID 38479836›Full record

ArticleGenome research2024

Modeling alternative translation initiation sites in plants reveals evolutionarily conserved

Ting-Ying Wu, Ya-Ru Li, Kai-Jyun Chang, Jhen-Cheng Fang, Daisuke Urano, Ming-Jung Liu

Abstract read
In one paragraph

Article in Genome research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. From Structure to Function of Promoters and 5'UTRs in Maize.International journal of molecular sciences · 2026
    Review
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ting-Ying WuInstitute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan; mjliu@gate.sinica.edu.tw tingying@gate.sinica.edu.tw.
Ya-Ru LiBiotechnology Center in Southern Taiwan, Academia Sinica, Tainan 711, Taiwan.
Kai-Jyun ChangBiotechnology Center in Southern Taiwan, Academia Sinica, Tainan 711, Taiwan.
Jhen-Cheng FangBiotechnology Center in Southern Taiwan, Academia Sinica, Tainan 711, Taiwan.
Daisuke UranoTemasek Life Sciences Laboratory, Singapore 117604, Singapore.
Ming-Jung LiuBiotechnology Center in Southern Taiwan, Academia Sinica, Tainan 711, Taiwan; mjliu@gate.sinica.edu.tw tingying@gate.sinica.edu.tw.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

mRNA translation relies on identifying translation initiation sites (TISs) in mRNAs. Alternative TISs are prevalent across plant transcriptomes, but the mechanisms for their recognition are unclear. Using ribosome profiling and machine learning, we developed models for predicting alternative TISs in the tomato (

Indexed as

EukaryotaPeptide Chain Initiation, Translational5' Untranslated RegionsCodon, InitiatorHumansPlantsRNA, Messenger5' Untranslated RegionsCodon, InitiatorRNA, Messenger

Identifiers

PMID38479836
PMCPMC10984385

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.