Evidence map›Paper›PMID 38478340›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

Generation, Expansion, and Biobanking of Gastrointestinal Patient-Derived Organoids from Tumor and Normal Tissues.

Manuel Cabeza-Segura, Blanca Garcia-Micó, Andrés Cervantes, Josefa Castillo

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
4.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. [Advances in the construction and application of a novel liver organoid model for hepatitis B virus infection].Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology · 2026
    Review
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 1 country.

Manuel Cabeza-Segura *Department of Medical Oncology, Hospital Clínico Universitario de Valencia, INCLIVA, Biomedical Research Institute, University of Valencia, Valencia, Spain.
Blanca Garcia-Micó *Department of Medical Oncology, Hospital Clínico Universitario de Valencia, INCLIVA, Biomedical Research Institute, University of Valencia, Valencia, Spain.
Andrés CervantesDepartment of Medical Oncology, Hospital Clínico Universitario de Valencia, INCLIVA, Biomedical Research Institute, University of Valencia, Valencia, Spain. andres.cervantes@uv.es.
Josefa CastilloDepartment of Medical Oncology, Hospital Clínico Universitario de Valencia, INCLIVA, Biomedical Research Institute, University of Valencia, Valencia, Spain. pepa.castillo@uv.es.
Centro de Investigación Biomédica en Red de Cáncer · ESHospital Clínico Universitario de Valencia · ESINCLIVA Health Research Institute · ESUniversitat de València · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Patient-derived organoids (PDOs) generated from adult stem cells present in tissues are invaluable tools for translational cancer research (Drost, Clevers, Nat Rev Cancer 18(7):407-418, 2018). The generation of this 3D cultures is not trivial and requires dedicated procedures. Despite the rapid increase in the use of organoids in cancer research, it is noteworthy that published procedures regarding their generation often lack critical information and standardized protocols remain elusive. Addressing these limitations, the protocol described in this chapter offers an in-depth and comprehensive guide to establishing, expanding, and freezing gastrointestinal PDOs obtained from normal and tumor tissue biopsies. Notably, it also provides valuable insights in the form of tips and tricks to guide and overcome potential challenges that may arise during the procedure.

Indexed as

Biological Specimen BanksNeoplasmsAdultBiopsyGastrointestinal TractHumansOrganoidsAdult stem cellsColorectal cancerDrug sensitivity assayGastric cancerNormal epithelial tissueOrganoid cryopreservationOrganoid establishmentOrganoid expansionPatient-derived organoidsTumour tissue

Identifiers

PMID38478340
OpenAlexW4392776821

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.