Evidence map›Paper›PMID 38477352›Full record

ArticleNucleic acids research2024

ATRX guards against aberrant differentiation in mesenchymal progenitor cells.

Yan Fang, Douglas Barrows, Yakshi Dabas, Thomas S Carroll, Sam Singer, William D Tap, Benjamin A Nacev

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. ATRX safeguards cellular identity duringbioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Yan FangDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY10065, USA.
Douglas BarrowsBioinformatics Resource Center, The Rockefeller University, New York, NY10065, USA.
Yakshi DabasLaboratory of Chromatin Biology and Epigenetics, The Rockefeller University, New York, NY 10065, USA.
Thomas S CarrollBioinformatics Resource Center, The Rockefeller University, New York, NY10065, USA.
Sam SingerDepartment of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY10065, USA.
William D TapDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY10065, USA.
Benjamin A NacevDepartment of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA.ORCID 0000-0003-4991-2492
Memorial Sloan Kettering Cancer Center · USRockefeller University · USUniversity of Pittsburgh · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
VECTOR CORE FACILITYP30CA047904 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CHRISTOPHER J. BAKKENIST · 1988 to 2026
$158.0M
Targeting Oncogenic Pathways in Genetically Complex SarcomasP50CA217694 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Marc Ladanyi · 2018 to 2026
$21.5M
Elucidating and targeting the effects of oncogenic histone mutationsK08CA245212 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NACEV, BENJAMIN A · 2019 to 2023
$1.4M
Connective Tissue Oncology SocietyDamon Runyon Cancer Research Foundation CI-124-23NCI NIH HHS K08 CA245212NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA047904NCI NIH HHS P50 CA217694NIH HHS K08CA245212
6 · The paper itself

Abstract

Alterations in the tumor suppressor ATRX are recurrently observed in mesenchymal neoplasms. ATRX has multiple epigenetic functions including heterochromatin formation and maintenance and regulation of transcription through modulation of chromatin accessibility. Here, we show in murine mesenchymal progenitor cells (MPCs) that Atrx deficiency aberrantly activated mesenchymal differentiation programs. This includes adipogenic pathways where ATRX loss induced expression of adipogenic transcription factors and enhanced adipogenic differentiation in response to differentiation stimuli. These changes are linked to loss of heterochromatin near mesenchymal lineage genes together with increased chromatin accessibility and gains of active chromatin marks. We additionally observed depletion of H3K9me3 at transposable elements, which are derepressed including near mesenchymal genes where they could serve as regulatory elements. Finally, we demonstrated that loss of ATRX in a mesenchymal malignancy, undifferentiated pleomorphic sarcoma, results in similar epigenetic disruption and de-repression of transposable elements. Together, our results reveal a role for ATRX in maintaining epigenetic states and transcriptional repression in mesenchymal progenitors and tumor cells and in preventing aberrant differentiation in the progenitor context.

Indexed as

Cell DifferentiationHeterochromatinMesenchymal Stem CellsX-linked Nuclear ProteinAdipogenesisAnimalsDNA Transposable ElementsEpigenesis, GeneticHistonesHumansMiceATRX protein, humanAtrx protein, mouseDNA Transposable ElementsHeterochromatinHistonesX-linked Nuclear Protein

Identifiers

PMID38477352
PMCPMC11109985
OpenAlexW4392749764

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.