Evidence map›Paper›PMID 38474154›Full record

ArticleInternational journal of molecular sciences2024

Validation of RNA Extraction Methods and Suitable Reference Genes for Gene Expression Studies in Developing Fetal Human Inner Ear Tissue.

Claudia Steinacher, Dietmar Rieder, Jasmin E Turner, Nita Solanky, Shin-Ya Nishio, Shin-Ichi Usami, Barbara Hausott, Anneliese Schrott-Fischer, Jozsef Dudas

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Claudia SteinacherDepartment of Otorhinolaryngology, Medical University Innsbruck, 6020 Innsbruck, Austria.ORCID 0000-0001-7309-9820
Dietmar RiederInstitute of Bioinformatics, Medical University Innsbruck, 6020 Innsbruck, Austria.
Jasmin E TurnerBiosciences Institute, Newcastle University, Newcastle upon Tyne NE1 4EP, UK.ORCID 0000-0002-5935-8838
Nita SolankyUCL Great Ormond Street Institute of Child Health, University College London, London WC1N 1EH, UK.ORCID 0000-0001-8304-5543
Shin-Ya NishioDepartment of Hearing Implant Sciences, Shinshu University School of Medicine, Matsumoto 3-1-1 Asahi, Nagano 390-8621, Japan.ORCID 0000-0001-6640-2297
Shin-Ichi UsamiDepartment of Hearing Implant Sciences, Shinshu University School of Medicine, Matsumoto 3-1-1 Asahi, Nagano 390-8621, Japan.ORCID 0000-0002-5068-6122
Barbara HausottInstitute of Neuroanatomy, Medical University Innsbruck, 6020 Innsbruck, Austria.ORCID 0000-0003-4869-4622
Anneliese Schrott-FischerDepartment of Otorhinolaryngology, Medical University Innsbruck, 6020 Innsbruck, Austria.
Jozsef DudasDepartment of Otorhinolaryngology, Medical University Innsbruck, 6020 Innsbruck, Austria.ORCID 0000-0002-9877-3399
Innsbruck Medical University · ATShinshu University · JPNewcastle University · GBUniversity College London · GB

Funding

FWF Austrian Science Fund I 4811
6 · The paper itself

Abstract

A comprehensive gene expression investigation requires high-quality RNA extraction, in sufficient amounts for real-time quantitative polymerase chain reaction and next-generation sequencing. In this work, we compared different RNA extraction methods and evaluated different reference genes for gene expression studies in the fetal human inner ear. We compared the RNA extracted from formalin-fixed paraffin-embedded tissue with fresh tissue stored at -80 °C in RNAlater solution and validated the expression stability of 12 reference genes (from gestational week 11 to 19). The RNA from fresh tissue in RNAlater resulted in higher amounts and a better quality of RNA than that from the paraffin-embedded tissue. The reference gene evaluation exhibited four stably expressed reference genes (

Indexed as

Gene Expression ProfilingRNAGene ExpressionGlyceraldehyde-3-Phosphate DehydrogenasesHumansReal-Time Polymerase Chain ReactionGlyceraldehyde-3-Phosphate DehydrogenasesRNAhuman fetal inner earOTOFreference geneRNA expressionRNA extractionTECTA

Identifiers

PMID38474154
PMCPMC10932218
OpenAlexW4392370409

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.