Evidence map›Paper›PMID 38473423›Full record

ArticleCancers2024

Transcriptomic, Proteomic, and Genomic Mutational Fraction Differences Based on HPV Status Observed in Patient-Derived Xenograft Models of Penile Squamous Cell Carcinoma.

Niki M Zacharias, Luis Segarra, Keiko Akagi, Natalie Wall Fowlkes, Huiqin Chen, Angelita Alaniz, Carolyn de la Cerda, Pedro Pesquera, Yuanxin Xi, Jing Wang and 5 more

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 95% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 0 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Niki M ZachariasDepartment of Urology, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Luis SegarraDepartment of Urology, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.ORCID 0000-0002-1945-7444
Keiko AkagiDepartment of Thoracic Head & Neck Medical Oncology, MD Anderson Cancer Center, Houston, TX 77030, USA.
Natalie Wall FowlkesDepartment of Veterinary Medicine & Surgery, MD Anderson Cancer Center, Houston, TX 77030, USA.
Huiqin ChenBiostatistics, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Angelita AlanizCenter for Health Promotion and Prevention Research, University of Texas Health Science Center at Houston, Houston, TX 77030, USA.
Carolyn de la CerdaDepartment of Surgical Oncology, MD Anderson Cancer Center, Houston, TX 77030, USA.
Pedro PesqueraDepartment of Urology, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Yuanxin XiDepartment of Bioinformatics and Computational Biology, MD Anderson Cancer Center, Houston, TX 77030, USA.
Jing WangDepartment of Bioinformatics and Computational Biology, MD Anderson Cancer Center, Houston, TX 77030, USA.
Jad ChahoudDepartment of Genitourinary Oncology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL 33612, USA.
Xin LuDepartment of Biological Sciences, University of Notre Dame, Norte Dame, IN 46556, USA.ORCID 0000-0002-0284-6478
Priya RaoDepartment of Pathology, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Magaly Martinez-FerrerDepartment of Pharmaceutical Sciences, University of Puerto Rico Medical Sciences Campus & Cancer Biology, UPR Comprehensive Cancer Center, San Juan, PR 00936, USA.
Curtis A PettawayDepartment of Urology, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
The University of Texas MD Anderson Cancer Center · USMoffitt Cancer Center · USThe University of Texas Health Science Center at Houston · USUniversity of Notre Dame · USUniversity of Puerto Rico, Medical Sciences Campus · PR

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Fabien Delerue · 1985 to 2026
$290.8M
UPR/MDACC Partnership for Excellence in Cancer Research(Parent Grant U54 CA096297)U54CA096297 · NCI · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI SHARON Hermes GIORDANO, REYNOLD Eugenio LOPEZ-ENRIQUEZ · 2002 to 2026
$36.9M
UPR/MDACC Partnership for Excellence in Cancer Research (Luis Segarra supplement)U54CA096300 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SHARON Hermes GIORDANO · 2002 to 2026
$23.8M
Converting Cold to Hot Tumor Microenvironment in Prostate Cancer by Targeting Chromatin EffectorR01CA248033 · NCI · UNIVERSITY OF NOTRE DAME · PI LU, XIN · 2020 to 2024
$1.8M
Immunosuppression and Metabolic Rewiring in Tumor-infiltrating NeutrophilsR01CA280097 · NCI · UNIVERSITY OF NOTRE DAME · PI Xin Lu · 2023 to 2026
$1.4M
NovaSeq6000S10OD024977 · OD · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI HUFF, VICKI · 2018 to 2018
$995k
NCI NIH HHS 2P30CA016672-38NCI NIH HHS P30 CA016672NCI NIH HHS R01 CA248033NCI NIH HHS R01 CA280097NCI NIH HHS U54 CA096297NCI NIH HHS U54 CA096300NIH HHS 1S10OD024977-01NIH HHS S10 OD024977NIH HHS U54CA096300/U54CA096297
6 · The paper itself

Abstract

Metastatic penile squamous cell carcinoma (PSCC) has only a 50% response rate to first-line combination chemotherapies and there are currently no targeted-therapy approaches. Therefore, we have an urgent need in advanced-PSCC treatment to find novel therapies. Approximately half of all PSCC cases are positive for high-risk human papillomavirus (HR-HPV). Our objective was to generate HPV-positive (HPV+) and HPV-negative (HPV-) patient-derived xenograft (PDX) models and to determine the biological differences between HPV+ and HPV- disease. We generated four HPV+ and three HPV- PSCC PDX animal models by directly implanting resected patient tumor tissue into immunocompromised mice. PDX tumor tissue was found to be similar to patient tumor tissue (donor tissue) by histology and short tandem repeat fingerprinting. DNA mutations were mostly preserved in PDX tissues and similar APOBEC (apolipoprotein B mRNA editing catalytic polypeptide) mutational fractions in donor tissue and PDX tissues were noted. A higher APOBEC mutational fraction was found in HPV+ versus HPV- PDX tissues (

Indexed as

APOBEC mutationshuman papillomavirus-positive penile squamous cell carcinomapatient-derived xenograftpenile squamous cell carcinoma

Identifiers

PMID38473423
PMCPMC10930474
OpenAlexW4392517461

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.